Python Module Index

p | s | x
 
p
pwem
    pwem.bibtex
    pwem.constants
    pwem.convert
    pwem.convert.atom_struct
    pwem.convert.headers
    pwem.convert.sequence
    pwem.convert.symmetry
    pwem.convert.transformations
    pwem.convert.utils
    pwem.emlib
    pwem.emlib.image
    pwem.emlib.image.image_handler
    pwem.emlib.lib
    pwem.emlib.metadata
    pwem.emlib.metadata.utils
    pwem.objects
    pwem.objects.data
    pwem.objects.data_tiltpairs
    pwem.protocols
    pwem.protocols.parallel
    pwem.protocols.protocol
    pwem.protocols.protocol_2d
    pwem.protocols.protocol_3d
    pwem.protocols.protocol_align_movies
    pwem.protocols.protocol_alignment_assign
    pwem.protocols.protocol_alignment_invertHand
    pwem.protocols.protocol_batch
    pwem.protocols.protocol_boxsize_parameters
    pwem.protocols.protocol_classes_selector
    pwem.protocols.protocol_create_stream_data
    pwem.protocols.protocol_ctf_assign
    pwem.protocols.protocol_export
    pwem.protocols.protocol_export.protocol_export_DB
    pwem.protocols.protocol_extract_coordinates
    pwem.protocols.protocol_import
    pwem.protocols.protocol_import.base
    pwem.protocols.protocol_import.coordinates
    pwem.protocols.protocol_import.ctfs
    pwem.protocols.protocol_import.dataimport
    pwem.protocols.protocol_import.images
    pwem.protocols.protocol_import.masks
    pwem.protocols.protocol_import.micrographs
    pwem.protocols.protocol_import.particles
    pwem.protocols.protocol_import.sequence
    pwem.protocols.protocol_import.volumes
    pwem.protocols.protocol_micrographs
    pwem.protocols.protocol_movie_eraser
    pwem.protocols.protocol_movies
    pwem.protocols.protocol_origin_sampling_volume
    pwem.protocols.protocol_particles
    pwem.protocols.protocol_particles_picking
    pwem.protocols.protocol_pdf_report
    pwem.protocols.protocol_set_editor
    pwem.protocols.protocol_set_filter
    pwem.protocols.protocol_sets
    pwem.protocols.protocol_tests
    pwem.protocols.protocol_tiltpairs
    pwem.protocols.protocol_tools
    pwem.utils
    pwem.viewers
    pwem.viewers.filehandlers
    pwem.viewers.plotter
    pwem.viewers.showj
    pwem.viewers.viewer_base
    pwem.viewers.viewer_chimera
    pwem.viewers.viewer_fsc
    pwem.viewers.viewer_localres
    pwem.viewers.viewer_pdf
    pwem.viewers.viewer_sequence
    pwem.viewers.viewer_vmd
    pwem.viewers.viewer_volumes
    pwem.viewers.viewers_data
    pwem.viewers.views
    pwem.wizards
    pwem.wizards.wizard
    pwem.wizards.wizards
    pwem.wizards.wizards_3d
    pwem.wizards.wizards_3d.callbacks
    pwem.wizards.wizards_3d.mask_structure_wizard
    pwem.wizards.wizards_3d.mask_volume_wizard
pyworkflow
    pyworkflow.apps
    pyworkflow.apps.pw_manager
    pyworkflow.apps.pw_plot
    pyworkflow.apps.pw_project
    pyworkflow.apps.pw_protocol_list
    pyworkflow.apps.pw_protocol_mpirun
    pyworkflow.apps.pw_protocol_remote
    pyworkflow.apps.pw_protocol_run
    pyworkflow.apps.pw_run_tests
    pyworkflow.apps.pw_schedule_run
    pyworkflow.apps.pw_sleep
    pyworkflow.apps.pw_sync_data
    pyworkflow.apps.pw_viewer
    pyworkflow.config
    pyworkflow.constants
    pyworkflow.exceptions
    pyworkflow.gui
    pyworkflow.gui.browser
    pyworkflow.gui.canvas
    pyworkflow.gui.dialog
    pyworkflow.gui.form
    pyworkflow.gui.graph
    pyworkflow.gui.graph_layout
    pyworkflow.gui.gui
    pyworkflow.gui.matplotlib_image
    pyworkflow.gui.plotter
    pyworkflow.gui.project
    pyworkflow.gui.project.base
    pyworkflow.gui.project.constants
    pyworkflow.gui.project.labels
    pyworkflow.gui.project.project
    pyworkflow.gui.project.searchprotocol
    pyworkflow.gui.project.searchrun
    pyworkflow.gui.project.steps
    pyworkflow.gui.project.utils
    pyworkflow.gui.project.viewdata
    pyworkflow.gui.project.viewprojects
    pyworkflow.gui.project.viewprotocols
    pyworkflow.gui.project.viewprotocols_extra
    pyworkflow.gui.text
    pyworkflow.gui.tooltip
    pyworkflow.gui.tree
    pyworkflow.gui.widgets
    pyworkflow.mapper
    pyworkflow.mapper.mapper
    pyworkflow.mapper.sqlite
    pyworkflow.mapper.sqlite_db
    pyworkflow.mapper.xmlmapper
    pyworkflow.object
    pyworkflow.plugin
    pyworkflow.project
    pyworkflow.project.config
    pyworkflow.project.manager
    pyworkflow.project.project
    pyworkflow.protocol
    pyworkflow.protocol.bibtex
    pyworkflow.protocol.constants
    pyworkflow.protocol.executor
    pyworkflow.protocol.hosts
    pyworkflow.protocol.launch
    pyworkflow.protocol.package
    pyworkflow.protocol.params
    pyworkflow.protocol.protocol
    pyworkflow.template
    pyworkflow.tests
    pyworkflow.tests.test_utils
    pyworkflow.tests.tests
    pyworkflow.utils
    pyworkflow.utils.dataset
    pyworkflow.utils.echo
    pyworkflow.utils.graph
    pyworkflow.utils.log
    pyworkflow.utils.mpi
    pyworkflow.utils.path
    pyworkflow.utils.process
    pyworkflow.utils.profiler
    pyworkflow.utils.progressbar
    pyworkflow.utils.properties
    pyworkflow.utils.reflection
    pyworkflow.utils.utils
    pyworkflow.utils.which
    pyworkflow.viewer
    pyworkflow.webservices
    pyworkflow.webservices.config
    pyworkflow.webservices.notifier
    pyworkflow.webservices.repository
    pyworkflow.wizard
 
s
scipion
    scipion.constants
    scipion.guiplugin
    scipion.install
    scipion.install.change_rpath
    scipion.install.clean
    scipion.install.find_deps
    scipion.install.funcs
    scipion.install.install_plugin
    scipion.install.plugin_funcs
    scipion.install.plugin_manager
    scipion.install.update_manager
    scipion.scripts
    scipion.scripts.config
    scipion.scripts.fontbrowser
    scipion.scripts.kickoff
    scipion.scripts.tutorial
    scipion.utils
 
x
xmipp3
    xmipp3.base
    xmipp3.bibtex
    xmipp3.constants
    xmipp3.convert
    xmipp3.convert.convert
    xmipp3.convert.dataimport
    xmipp3.convert.io_coordinates
    xmipp3.programs
    xmipp3.protocols
    xmipp3.protocols.protocol_align_volume
    xmipp3.protocols.protocol_align_volume_and_particles
    xmipp3.protocols.protocol_analyze_local_ctf
    xmipp3.protocols.protocol_angular_alignment_zernike3d
    xmipp3.protocols.protocol_angular_graph_consistency
    xmipp3.protocols.protocol_apply_alignment
    xmipp3.protocols.protocol_apply_deformation_zernike3d
    xmipp3.protocols.protocol_apply_transformation_matrix
    xmipp3.protocols.protocol_assignment_tilt_pair
    xmipp3.protocols.protocol_break_symmetry
    xmipp3.protocols.protocol_center_particles
    xmipp3.protocols.protocol_cl2d
    xmipp3.protocols.protocol_cl2d_align
    xmipp3.protocols.protocol_classes_2d_mapping
    xmipp3.protocols.protocol_classification_gpuCorr
    xmipp3.protocols.protocol_classification_gpuCorr_full
    xmipp3.protocols.protocol_classification_gpuCorr_semi
    xmipp3.protocols.protocol_classify_kmeans2d
    xmipp3.protocols.protocol_compare_angles
    xmipp3.protocols.protocol_compare_reprojections
    xmipp3.protocols.protocol_consensus_classes3D
    xmipp3.protocols.protocol_consensus_local_ctf
    xmipp3.protocols.protocol_convert_pdb
    xmipp3.protocols.protocol_core_analysis
    xmipp3.protocols.protocol_create_gallery
    xmipp3.protocols.protocol_ctf_consensus
    xmipp3.protocols.protocol_ctf_correct_wiener2d
    xmipp3.protocols.protocol_ctf_defocus_group
    xmipp3.protocols.protocol_ctf_micrographs
    xmipp3.protocols.protocol_deep_align
    xmipp3.protocols.protocol_deep_denoising
    xmipp3.protocols.protocol_deep_hand
    xmipp3.protocols.protocol_deep_micrograph_screen
    xmipp3.protocols.protocol_denoise_particles
    xmipp3.protocols.protocol_eliminate_empty_images
    xmipp3.protocols.protocol_enrich
    xmipp3.protocols.protocol_extract_asymmetric_unit
    xmipp3.protocols.protocol_extract_particles
    xmipp3.protocols.protocol_extract_particles_movies
    xmipp3.protocols.protocol_extract_particles_pairs
    xmipp3.protocols.protocol_generate_reprojections
    xmipp3.protocols.protocol_helical_parameters
    xmipp3.protocols.protocol_kerdensom
    xmipp3.protocols.protocol_kmeans_clustering
    xmipp3.protocols.protocol_local_ctf
    xmipp3.protocols.protocol_metaprotocol_create_output
    xmipp3.protocols.protocol_metaprotocol_create_subset
    xmipp3.protocols.protocol_metaprotocol_discrete_heterogeneity_scheduler
    xmipp3.protocols.protocol_metaprotocol_golden_highres
    xmipp3.protocols.protocol_ml2d
    xmipp3.protocols.protocol_mltomo
    xmipp3.protocols.protocol_movie_average
    xmipp3.protocols.protocol_movie_correlation
    xmipp3.protocols.protocol_movie_gain
    xmipp3.protocols.protocol_movie_max_shift
    xmipp3.protocols.protocol_movie_opticalflow
    xmipp3.protocols.protocol_movie_split_frames
    xmipp3.protocols.protocol_multiple_fscs
    xmipp3.protocols.protocol_multireference_alignability
    xmipp3.protocols.protocol_normalize_strain
    xmipp3.protocols.protocol_particle_boxsize
    xmipp3.protocols.protocol_particle_pick
    xmipp3.protocols.protocol_particle_pick_automatic
    xmipp3.protocols.protocol_particle_pick_consensus
    xmipp3.protocols.protocol_particle_pick_pairs
    xmipp3.protocols.protocol_particle_pick_remove_duplicates
    xmipp3.protocols.protocol_pdb_deform_zernike3d
    xmipp3.protocols.protocol_phantom_create
    xmipp3.protocols.protocol_pick_noise
    xmipp3.protocols.protocol_postProcessing_deepPostProcessing
    xmipp3.protocols.protocol_preprocess
    xmipp3.protocols.protocol_preprocess.geometrical_mask
    xmipp3.protocols.protocol_preprocess.protocol_add_noise
    xmipp3.protocols.protocol_preprocess.protocol_create_mask2d
    xmipp3.protocols.protocol_preprocess.protocol_create_mask3d
    xmipp3.protocols.protocol_preprocess.protocol_crop_resize
    xmipp3.protocols.protocol_preprocess.protocol_filter
    xmipp3.protocols.protocol_preprocess.protocol_image_operate
    xmipp3.protocols.protocol_preprocess.protocol_mask
    xmipp3.protocols.protocol_preprocess.protocol_movie_resize
    xmipp3.protocols.protocol_preprocess.protocol_preprocess
    xmipp3.protocols.protocol_preprocess.protocol_process
    xmipp3.protocols.protocol_preprocess_micrographs
    xmipp3.protocols.protocol_projmatch
    xmipp3.protocols.protocol_projmatch.projmatch_form
    xmipp3.protocols.protocol_projmatch.projmatch_initialize
    xmipp3.protocols.protocol_projmatch.projmatch_steps
    xmipp3.protocols.protocol_projmatch.protocol_projmatch
    xmipp3.protocols.protocol_random_conical_tilt
    xmipp3.protocols.protocol_ransac
    xmipp3.protocols.protocol_reconstruct_fourier
    xmipp3.protocols.protocol_reconstruct_heterogeneous
    xmipp3.protocols.protocol_reconstruct_highres
    xmipp3.protocols.protocol_reconstruct_significant
    xmipp3.protocols.protocol_reconstruct_swarm
    xmipp3.protocols.protocol_resolution3d
    xmipp3.protocols.protocol_resolution_bfactor
    xmipp3.protocols.protocol_resolution_deepres
    xmipp3.protocols.protocol_resolution_directional
    xmipp3.protocols.protocol_resolution_fso
    xmipp3.protocols.protocol_resolution_monogenic_signal
    xmipp3.protocols.protocol_rotate_volume
    xmipp3.protocols.protocol_rotational_spectra
    xmipp3.protocols.protocol_rotational_symmetry
    xmipp3.protocols.protocol_screen_deepConsensus
    xmipp3.protocols.protocol_screen_deeplearning
    xmipp3.protocols.protocol_screen_particles
    xmipp3.protocols.protocol_shift_particles
    xmipp3.protocols.protocol_shift_volume
    xmipp3.protocols.protocol_simulate_ctf
    xmipp3.protocols.protocol_solid_angles
    xmipp3.protocols.protocol_split_volume
    xmipp3.protocols.protocol_split_volume_hierarchical_cluster
    xmipp3.protocols.protocol_structure_map
    xmipp3.protocols.protocol_structure_map_zernike3d
    xmipp3.protocols.protocol_subtract_projection
    xmipp3.protocols.protocol_trigger_data
    xmipp3.protocols.protocol_validate_fscq
    xmipp3.protocols.protocol_validate_nontilt
    xmipp3.protocols.protocol_validate_overfitting
    xmipp3.protocols.protocol_volume_adjust_sub
    xmipp3.protocols.protocol_volume_consensus
    xmipp3.protocols.protocol_volume_deform_zernike3d
    xmipp3.protocols.protocol_volume_local_sharpening
    xmipp3.protocols.protocol_volume_strain
    xmipp3.protocols.protocol_write_testC
    xmipp3.protocols.protocol_write_testP
    xmipp3.utils
    xmipp3.viewers
    xmipp3.viewers.plotter
    xmipp3.viewers.viewer
    xmipp3.viewers.viewer_analyze_local_ctf
    xmipp3.viewers.viewer_angular_alignment_sph
    xmipp3.viewers.viewer_cl2d
    xmipp3.viewers.viewer_classes3D
    xmipp3.viewers.viewer_consensus_classes3D
    xmipp3.viewers.viewer_ctf_consensus
    xmipp3.viewers.viewer_deep_align
    xmipp3.viewers.viewer_deep_consensus
    xmipp3.viewers.viewer_deep_micrograph_cleaner
    xmipp3.viewers.viewer_deepEMHancer
    xmipp3.viewers.viewer_eliminate_empty_images
    xmipp3.viewers.viewer_extract_asymmetric_unit
    xmipp3.viewers.viewer_local_sharpening
    xmipp3.viewers.viewer_metaprotocol_golden_highres
    xmipp3.viewers.viewer_ml2d
    xmipp3.viewers.viewer_mltomo
    xmipp3.viewers.viewer_movie_alignment
    xmipp3.viewers.viewer_normalize_strain
    xmipp3.viewers.viewer_pdb_deform_zernike3d
    xmipp3.viewers.viewer_projmatch
    xmipp3.viewers.viewer_ransac
    xmipp3.viewers.viewer_reconstruct_highres
    xmipp3.viewers.viewer_resolution3d
    xmipp3.viewers.viewer_resolution_bfactor
    xmipp3.viewers.viewer_resolution_deepres
    xmipp3.viewers.viewer_resolution_directional
    xmipp3.viewers.viewer_resolution_fso
    xmipp3.viewers.viewer_resolution_monogenic_signal
    xmipp3.viewers.viewer_solid_angles
    xmipp3.viewers.viewer_split_volume
    xmipp3.viewers.viewer_structure_map
    xmipp3.viewers.viewer_swarm
    xmipp3.viewers.viewer_validate_fscq
    xmipp3.viewers.viewer_validate_nontilt
    xmipp3.viewers.viewer_validate_overfitting
    xmipp3.viewers.viewer_volume_consensus
    xmipp3.viewers.viewer_volume_deform_zernike3d
    xmipp3.viewers.viewer_volume_strain
    xmipp3.viewers.viewer_volume_subtraction
    xmipp3.wizards