betasVectorDefault | Compute vector of beta values |

BevertonHolt | Beverton-Holt settler-recruit relationship |

chile.loco | Connectivity matrix for loco (Concholepas concholepas) from Chile |

ConnMatTools | Tools for working with connectivity matrices |

d.mix.dists.func | Returns probability density function (PDF) for a mix of marked and unmarked individuals |

d.rel.conn.beta.prior | Estimate the probability distribution of relative connectivity values assuming a Beta-distributed prior |

d.rel.conn.dists.func | Functions for estimating the probability distribution for relative connectivity given a pair of distributions for scores for marked and unmarked individuals |

d.rel.conn.finite.settlement | Estimate the probability distribution for the number of settlers originating at a site given a sample from a finite settler pool |

d.rel.conn.multinomial.unnorm | Calculates unnormalized probability density for relative connectivity values from multiple distinct sites |

d.rel.conn.multiple | Functions for estimating the probability distribution of relative connectivity values as a weighted sum over possible input parameters |

d.rel.conn.unif.prior | Estimate the probability distribution of relative connectivity values assuming a uniform prior distribution |

damselfish.lods | Sample LOD score data for simulated and real parent-child pairs |

DispersalPerRecruitModel | Population dynamics model based on lifetime-egg-production |

DPRHomerangeGravity | Extended DPR population dynamics model to include homerange movement |

dual.mark.transmission | Fraction of eggs marked for male and female mark transmission |

eigs | Compute some eigenvalues of a matrix |

gammaParamsConvert | Gamma distribution shape and scale parameters from mean and standard deviation, or vice-versa |

hockeyStick | Hockey-stick settler-recruit relationship |

laplacianConnMat | Uniform Laplacian connectivity matrix |

localRetention | Local retention of a connectivity matrix |

mergeSubpops | Merge subpopulations |

optim.rel.conn.dists | Maximum-likelihood estimate for relative connectivity given two distributions for scores for marked and unmarked individuals |

optimalSplitConnMat | Iteratively, optimally split a connectivity matrix |

p.rel.conn.beta.prior | Estimate the probability distribution of relative connectivity values assuming a Beta-distributed prior |

p.rel.conn.dists.func | Functions for estimating the probability distribution for relative connectivity given a pair of distributions for scores for marked and unmarked individuals |

p.rel.conn.finite.settlement | Estimate the probability distribution for the number of settlers originating at a site given a sample from a finite settler pool |

p.rel.conn.multiple | Functions for estimating the probability distribution of relative connectivity values as a weighted sum over possible input parameters |

p.rel.conn.unif.prior | Estimate the probability distribution of relative connectivity values assuming a uniform prior distribution |

prob.marked | Returns probability a set of observations correspond to marked individuals |

protectedAreaSelection | Function to select optimal network of protected areas based on connectivity |

q.rel.conn.beta.prior | Estimate the probability distribution of relative connectivity values assuming a Beta-distributed prior |

q.rel.conn.beta.prior.func | |

q.rel.conn.dists.func | Functions for estimating the probability distribution for relative connectivity given a pair of distributions for scores for marked and unmarked individuals |

q.rel.conn.finite.settlement | Estimate the probability distribution for the number of settlers originating at a site given a sample from a finite settler pool |

q.rel.conn.multiple | Functions for estimating the probability distribution of relative connectivity values as a weighted sum over possible input parameters |

q.rel.conn.multiple.func | |

q.rel.conn.unif.prior | Estimate the probability distribution of relative connectivity values assuming a uniform prior distribution |

qualitySubpops | Quality measure for subpopulation division |

r.marked.egg.fraction | Estimates of fraction of eggs marked accounting for variability in reproductive output |

recSplitConnMat | Recursively subdivides a set of subpoplations |

reducedConnMat | Reduced connectivity matrix according to a set of subpopulations |

relativeLocalRetention | Relative local retention of a connectivity matrix |

selfRecruitment | Self recruitment of a connectivity matrix |

settlerRecruitSlopeCorrection | Correction for slope of settler-recruit relationship |

splitConnMat | Split connectivity matrix into subpopulations |

stepfun.hist | Create a probability density step function from a histogram object |

subpopsVectorToList | Convert subpopulation vector to a list of indices |