sphire.protocols.protocol_cryolo_picking module

class sphire.protocols.protocol_cryolo_picking.SphireProtCRYOLOPicking(**args)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto

Picks particles in a set of micrographs either manually or in a supervised mode.

boxSizeEstimated = <pyworkflow.object.Boolean object>
createConfigStep()[source]
createOutputStep()[source]

The output is just an Integer. Other protocols can use it in those IntParam if it has set allowsPointer=True

getInputModel()[source]
getMicsWorkingDir(micList)[source]
getOutpuCBOXtDir()[source]
getOutputDISTRDir()[source]
readCoordsFromMics(outputDir, micDoneList, outputCoords)[source]

This method read coordinates from a given list of micrographs