pwem.wizards.wizards_3d.mask_volume_wizard module

class pwem.wizards.wizards_3d.mask_volume_wizard.MaskVolumeWizard(filename)

Bases: object

Create a mask for a volume interactively. Masks currently implemented: - Spherical mask

changeThreshold(threshold)

change_view(event)

downsamplingPC(voxel_size)

get_sphere_params(mass_center=True)

Return x,y,z,r array. Two possible conventions are implemented: - Bottom Left Corner (All Coordinates positive) - Center of Mass (Coordinates can be positive or negative) – Default

initializePlot()

is_window_closed()

on_release(event)

plotScatter()

plot_sphere(radius)

press_shift(event)

release_shift(event)

remove_outliers()

set_axes_equal(ax: matplotlib.axes._axes.Axes)

Set 3D plot axes to equal scale.

Make axes of 3D plot have equal scale so that spheres appear as spheres and cubes as cubes. Required since ax.axis(‘equal’) and ax.set_aspect(‘equal’) don’t work on 3D.