pwem.protocols.protocol_particles_picking module¶
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class
pwem.protocols.protocol_particles_picking.
ProtParticlePicking
(**kwargs)[source]¶ Bases:
pwem.protocols.protocol_particles.ProtParticles
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OUTPUT_PREFIX
= 'outputCoordinates'¶
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class
pwem.protocols.protocol_particles_picking.
ProtParticlePickingAuto
(**kwargs)[source]¶ Bases:
pwem.protocols.protocol_particles_picking.ProtParticlePicking
A derived class from ProtParticlePicking to differentiate those picking protocols that works in automatic way, i.e., that are not interactive and are also good candidates to be run in streaming.
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pickMicrographStep
(micName, *args)[source]¶ Step function that will be common for all picking protocols. It will take care of re-building the micrograph object from the micDict argument and perform any conversion if needed. Then, the function _pickMicrograph will be called, that should be implemented by each picking protocol.
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class
pwem.protocols.protocol_particles_picking.
ProtPickingDifference
(**kwargs)[source]¶ Bases:
pwem.protocols.protocol_particles_picking.ProtParticlePicking
Protocol to compute the difference between a reference SetOfParticles and a another set (usually a negative reference).
The output will be a SetOfCoordinates with the particles in the reference input that are not close to coordinates in the negative input.