chimera.wizards module

class chimera.wizards.GetChainResidues2WizardChimera[source]

Bases: chimera.wizards.GetChainResiduesWizardChimera

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class chimera.wizards.GetChainResiduesWizardChimera[source]

Bases: pwem.wizards.wizards.GetStructureChainsWizard

editionListOfResidues(modelsFirstResidue, model, chain)[source]
getResidues(form)[source]
show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class chimera.wizards.GetStructureChains2WizardChimera[source]

Bases: pwem.wizards.wizards.GetStructureChainsWizard

show(form, *params)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class chimera.wizards.GetStructureChainsWizardChimera[source]

Bases: pwem.wizards.wizards.GetStructureChainsWizard

class chimera.wizards.ProtContactsWizardChimera[source]

Bases: pyworkflow.wizard.Wizard

Return a table with two columns. First one is the chain id second one may be used by the user to group merge chains into a single object. If two or more chains are merged, the contacts will NOT be computed between the chains belonging to the same group

recibingAttribute = 'chainStructure'
show(form, *args)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.