Scipion

Set up

  • Installing Scipion v3.0
  • Scipion configuration
  • Host configuration
  • Troubleshooting

User documentation

  • Graphical interface manuals
  • Tutorials
  • Processing How To’s

Facilities

  • On-the-fly processing
  • Streaming workflows
  • Summary Reports

Developer documentation

  • Developers Page

API Documentation

  • Scipion API
  • Plugins API
    • appion package
    • atomstructutils package
    • atsas package
    • bamfordlab package
    • bsoft package
    • ccp4 package
    • chimera package
    • cistem package
    • cryoef package
    • cryosparc2 package
    • deepfinder package
    • dynamo package
    • eman2 package
    • emxlib package
    • fsc3d package
    • gautomatch package
    • gctf package
    • imod package
    • localrec package
    • locscale package
    • motioncorr package
    • novactf package
    • phenix package
    • relion package
    • resmap package
    • sphire package
    • spider package
    • tomo package
    • tomoj package
    • topaz package
    • xmipp2 package
    • xmipp3 package
      • xmipp3.convert package
      • xmipp3.protocols package
        • xmipp3.protocols.protocol_preprocess package
        • xmipp3.protocols.protocol_projmatch package
        • xmipp3.protocols.protocol_align_volume module
        • xmipp3.protocols.protocol_align_volume_and_particles module
        • xmipp3.protocols.protocol_analyze_local_ctf module
        • xmipp3.protocols.protocol_angular_alignment_sph module
        • xmipp3.protocols.protocol_apply_alignment module
        • xmipp3.protocols.protocol_apply_transformation_matrix module
        • xmipp3.protocols.protocol_assignment_tilt_pair module
        • xmipp3.protocols.protocol_break_symmetry module
        • xmipp3.protocols.protocol_center_particles module
        • xmipp3.protocols.protocol_cl2d module
        • xmipp3.protocols.protocol_cl2d_align module
        • xmipp3.protocols.protocol_classification_gpuCorr module
        • xmipp3.protocols.protocol_classification_gpuCorr_full module
        • xmipp3.protocols.protocol_classification_gpuCorr_semi module
        • xmipp3.protocols.protocol_classify_kmeans2d module
        • xmipp3.protocols.protocol_compare_angles module
        • xmipp3.protocols.protocol_compare_reprojections module
        • xmipp3.protocols.protocol_consensus_classes3D module
        • xmipp3.protocols.protocol_consensus_local_ctf module
        • xmipp3.protocols.protocol_convert_pdb module
        • xmipp3.protocols.protocol_create_gallery module
        • xmipp3.protocols.protocol_ctf_consensus module
        • xmipp3.protocols.protocol_ctf_correct_wiener2d module
        • xmipp3.protocols.protocol_ctf_defocus_group module
        • xmipp3.protocols.protocol_ctf_micrographs module
        • xmipp3.protocols.protocol_deep_denoising module
        • xmipp3.protocols.protocol_deep_micrograph_screen module
        • xmipp3.protocols.protocol_denoise_particles module
        • xmipp3.protocols.protocol_eliminate_empty_images module
        • xmipp3.protocols.protocol_enrich module
        • xmipp3.protocols.protocol_extract_asymmetric_unit module
        • xmipp3.protocols.protocol_extract_particles module
        • xmipp3.protocols.protocol_extract_particles_movies module
        • xmipp3.protocols.protocol_extract_particles_pairs module
        • xmipp3.protocols.protocol_generate_reprojections module
        • xmipp3.protocols.protocol_helical_parameters module
        • xmipp3.protocols.protocol_kerdensom module
        • xmipp3.protocols.protocol_local_ctf module
        • xmipp3.protocols.protocol_metaprotocol_create_output module
        • xmipp3.protocols.protocol_metaprotocol_create_subset module
        • xmipp3.protocols.protocol_metaprotocol_discrete_heterogeneity_scheduler module
        • xmipp3.protocols.protocol_metaprotocol_golden_highres module
        • xmipp3.protocols.protocol_ml2d module
        • xmipp3.protocols.protocol_mltomo module
        • xmipp3.protocols.protocol_movie_average module
        • xmipp3.protocols.protocol_movie_correlation module
        • xmipp3.protocols.protocol_movie_gain module
        • xmipp3.protocols.protocol_movie_max_shift module
        • xmipp3.protocols.protocol_movie_opticalflow module
        • xmipp3.protocols.protocol_movie_split_frames module
        • xmipp3.protocols.protocol_multiple_fscs module
        • xmipp3.protocols.protocol_multireference_alignability module
        • xmipp3.protocols.protocol_normalize_strain module
        • xmipp3.protocols.protocol_particle_boxsize module
        • xmipp3.protocols.protocol_particle_pick module
        • xmipp3.protocols.protocol_particle_pick_automatic module
        • xmipp3.protocols.protocol_particle_pick_consensus module
        • xmipp3.protocols.protocol_particle_pick_pairs module
        • xmipp3.protocols.protocol_particle_pick_remove_duplicates module
        • xmipp3.protocols.protocol_pick_noise module
        • xmipp3.protocols.protocol_postProcessing_deepPostProcessing module
        • xmipp3.protocols.protocol_preprocess_micrographs module
        • xmipp3.protocols.protocol_random_conical_tilt module
        • xmipp3.protocols.protocol_ransac module
        • xmipp3.protocols.protocol_reconstruct_fourier module
        • xmipp3.protocols.protocol_reconstruct_heterogeneous module
        • xmipp3.protocols.protocol_reconstruct_highres module
        • xmipp3.protocols.protocol_reconstruct_significant module
        • xmipp3.protocols.protocol_reconstruct_swarm module
        • xmipp3.protocols.protocol_resolution3d module
        • xmipp3.protocols.protocol_resolution_deepres module
        • xmipp3.protocols.protocol_resolution_directional module
        • xmipp3.protocols.protocol_resolution_fso module
        • xmipp3.protocols.protocol_resolution_monogenic_signal module
        • xmipp3.protocols.protocol_rotational_spectra module
        • xmipp3.protocols.protocol_rotational_symmetry module
        • xmipp3.protocols.protocol_screen_deepConsensus module
        • xmipp3.protocols.protocol_screen_deeplearning module
        • xmipp3.protocols.protocol_screen_particles module
        • xmipp3.protocols.protocol_simulate_ctf module
        • xmipp3.protocols.protocol_solid_angles module
        • xmipp3.protocols.protocol_split_volume module
        • xmipp3.protocols.protocol_split_volume_hierarchical_cluster module
        • xmipp3.protocols.protocol_structure_map_sph module
        • xmipp3.protocols.protocol_trigger_data module
        • xmipp3.protocols.protocol_validate_fscq module
        • xmipp3.protocols.protocol_validate_nontilt module
        • xmipp3.protocols.protocol_validate_overfitting module
        • xmipp3.protocols.protocol_volume_adjust_sub module
        • xmipp3.protocols.protocol_volume_consensus module
        • xmipp3.protocols.protocol_volume_deform_sph module
        • xmipp3.protocols.protocol_volume_local_sharpening module
        • xmipp3.protocols.protocol_volume_strain module
        • xmipp3.protocols.protocol_write_testC module
        • xmipp3.protocols.protocol_write_testP module
      • xmipp3.viewers package
      • xmipp3.base module
      • xmipp3.bibtex module
      • xmipp3.constants module
      • xmipp3.programs module
      • xmipp3.utils module
      • xmipp3.wizards module
    • xmipptomo package
  • Xmipp API

Get in touch

  • Contact Us

Licences

  • Licenses
Scipion
  • Docs »
  • Plugins API »
  • xmipp3 package »
  • xmipp3.protocols package »
  • xmipp3.protocols.protocol_preprocess package
  • View page source

xmipp3.protocols.protocol_preprocess package¶

Submodules¶

  • xmipp3.protocols.protocol_preprocess.geometrical_mask module
  • xmipp3.protocols.protocol_preprocess.protocol_add_noise module
  • xmipp3.protocols.protocol_preprocess.protocol_create_mask2d module
  • xmipp3.protocols.protocol_preprocess.protocol_create_mask3d module
  • xmipp3.protocols.protocol_preprocess.protocol_crop_resize module
  • xmipp3.protocols.protocol_preprocess.protocol_filter module
  • xmipp3.protocols.protocol_preprocess.protocol_image_operate module
  • xmipp3.protocols.protocol_preprocess.protocol_mask module
  • xmipp3.protocols.protocol_preprocess.protocol_movie_resize module
  • xmipp3.protocols.protocol_preprocess.protocol_preprocess module
  • xmipp3.protocols.protocol_preprocess.protocol_process module

Module contents¶

Next Previous

© Copyright 2020, Scipion team

Built with Sphinx using a theme provided by Read the Docs.
Other Versions v: dependabot/pip/pygments-2.7.4
Branches
az-install
dependabot/pip/jinja2-2.11.3
dependabot/pip/pygments-2.7.4
dependabot/pip/urllib3-1.26.5
gh-pages
release-2.0.0
release-3.0.0
rsanchezgarc-patch-1