pwem.viewers.views module

class pwem.viewers.views.Classes3DView(project, inputid, path, other='', viewParams={}, **kwargs)

Bases: pwem.viewers.views.ClassesView

Customized ObjectView for SetOfClasses.

class pwem.viewers.views.ClassesView(project, inputid, path, other='', viewParams={}, **kwargs)

Bases: pwem.viewers.views.ObjectView

Customized ObjectView for SetOfClasses.

class pwem.viewers.views.CoordinatesObjectView(project, path, outputdir, protocol, pickerProps=None, inTmpFolder=False, **kwargs)

Bases: pwem.viewers.views.DataView

Wrapper to View but for displaying Scipion objects.

MODE_AUTOMATIC = 'Automatic'

show()

This method should be overwritten to implement how this particular view will be displayed in desktop.

class pwem.viewers.views.CtfView(project, ctfSet, other='', **kwargs)

Bases: pwem.viewers.views.ObjectView

Customized ObjectView for SetOfCTF objects .

EXTRA_LABELS = ['_ctftilt_tiltAxis', '_ctftilt_tiltAngle', '_xmipp_ctfCritFirstZero', '_xmipp_ctfCritCorr13', '_xmipp_ctfCritIceness', '_xmipp_ctfCritFitting', '_xmipp_ctfCritNonAstigmaticValidty', '_xmipp_ctfCritCtfMargin', '_xmipp_ctfCritMaxFreq', '_xmipp_ctfCritPsdCorr90', '_xmipp_ctfVPPphaseshift']

PSD_LABELS = ['_micObj.thumbnail._filename', '_psdFile', '_xmipp_enhanced_psd', '_xmipp_ctfmodel_quadrant', '_xmipp_ctfmodel_halfplane', '_micObj.plotGlobal._filename']

class pwem.viewers.views.DataView(path, viewParams={}, **kwargs)

Bases: pyworkflow.viewer.View

Wrapper the arguments to showj (either web or desktop). Also useful to visualize images that are not objects, e.g.: dark or gain images

getPath()

getShowJParams()

getShowJWebParams()

getTableName()

getViewParams()

Give access to the viewParams dict.

setMemory(memory)

show()

This method should be overwritten to implement how this particular view will be displayed in desktop.

class pwem.viewers.views.ImageView(imagePath, **kwargs)

Bases: pyworkflow.viewer.View

Customized ObjectView for SetOfClasses.

getImagePath()

class pwem.viewers.views.MicrographsView(project, micSet, other='', **kwargs)

Bases: pwem.viewers.views.ObjectView

Customized ObjectView for SetOfCTF objects .

EXTRA_LABELS = ['_filename']

RENDER_LABELS = ['thumbnail._filename', 'psdCorr._filename', 'plotGlobal._filename']

class pwem.viewers.views.ObjectView(project, inputid, path, other='', viewParams={}, **kwargs)

Bases: pwem.viewers.views.DataView

Wrapper to DataView but for displaying Scipion objects.

getShowJParams()

show()

This method should be overwritten to implement how this particular view will be displayed in desktop.

class pwem.viewers.views.TableView(headerList, dataList, mesg=None, title=None, height=10, width=400, padding=10, outFileName=None)

Bases: pyworkflow.viewer.View

show table, pass values as: headerList = [‘name’, ‘surname’] dataList = [ (‘John’, ‘Smith’) , (‘Larry’, ‘Black’) , (‘Walter’, ‘White’) , (‘Fred’, ‘Becker’) ]. msg = message to be shown at the table top title= window title height: Specifies the number of rows which should be visible width: minimum width in pixels fontSize= font size padding: cell extra width ——————— Alternative way to create a table using showj views = [] labels = ‘_1 _2’ emSet = EMSet(filename=”/tmp/kk.sqlite”) emObject = EMObject() emObject._1 = String(‘first parameter’) emObject._2 = Float(12.) emSet.append(emObject) emObject = EMObject() emObject._1 = String(‘second parameter’) emObject._2 = Float(22.) emSet.append(emObject) emSet.write() views.append(ObjectView(self._project,

self.protocol.strId(), “/tmp/kk.sqlite”, viewParams = {MODE: MODE_MD, ORDER: labels, VISIBLE: labels}))

return views

saveData()

Save data in the treeView Widget to a file. If not provided the outfile is in the Logs directory the name is the title of the table