continuousflex.protocols.protocol_nma_base module

class continuousflex.protocols.protocol_nma_base.FlexProtNMABase(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol

Protocol for flexible analysis using NMA.

computeModesStep(fnPseudoatoms, numberOfModes, cutoffStr)[source]
qualifyModesStep(numberOfModes, collectivityThreshold, structureEM, suffix='')[source]
reformatOutputStep(fnPseudoatoms)[source]