continuousflex.protocols.pdb.protocol_pseudoatoms_base module

class continuousflex.protocols.pdb.protocol_pseudoatoms_base.FlexProtConvertToPseudoAtomsBase(**kwargs)

Bases: pwem.protocols.protocol_3d.Prot3D

convertToPseudoAtomsStep(inputFn, fnMask, sampling, prefix='')

createChimeraScript(volume, pdb)

Create a chimera script to visualize a pseudoatoms pdb obteined from a given EM 3d volume. A property will be set in the pdb object to store the location of the script.