bsoft.convert module¶
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bsoft.convert.
createBsoftInputParticles
(imgSet, starFile, stackFile)[source]¶ Ensure that ‘starFile’ is a valid STAR files with particles. If the imgSet comes from Bsoft, just create a link. If not, then write the proper file.
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bsoft.convert.
readSetOfCoordinates
(outputDir, micSet, coordSet)[source]¶ Read from Bsoft .star files. Params:
outputDir: the directory where the .star files are.
- micSet: the SetOfMicrographs to associate the .star, which
- name should be the same of the micrographs.
coordSet: the SetOfCoordinates that will be populated.
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bsoft.convert.
rowToObject
(row, obj, attrDict, extraLabels=[])[source]¶ This function will convert from a md Row to an EMObject. Params:
row: the Row instance (input) obj: the EMObject instance (output) attrDict: dictionary with the map between obj attributes(keys) and
row MDLabels in Bsoft (values).