xmipp3.protocols.protocol_projmatch.projmatch_steps module¶
Since the Projection Matching protocol of Xmipp 3 has a very large form definition, we have separated in this sub-module.
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
getProjectionMatchingArgs
(self, iterN)[source]¶ Get the arguments for the projection matching program that does not vary with the CTF groups.
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertAngularClassAverageStep
(self, iterN, refN, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertAngularProjectLibraryStep
(self, iterN, refN, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertComputeResolutionStep
(self, iterN, refN, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertFilterVolumeStep
(self, iterN, refN, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertMaskReferenceStep
(self, iterN, refN, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
insertReconstructionStep
(self, iterN, refN, suffix='', **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runAngularProjectLibraryStep
(self, iterN, refN, args, stepParams, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runAssignImagesToReferences
(self, iterN, **kwargs)[source]¶ assign the images to the different references based on the crosscorrelation coeficient #if only one reference it just copy the docfile generated in the previous step
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runCalculateFscStep
(self, iterN, refN, args, constantToAdd, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runCreateOutputStep
(self)[source]¶ Create standard output results_images, result_classes
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runExecuteCtfGroupsStep
(self, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runFilterVolumeStep
(self, iterN, refN, constantToAddToFiltration)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runInitAngularReferenceFileStep
(self)[source]¶ Create Initial angular file. Either fill it with zeros or copy input
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runProjectionMatching
(self, iterN, refN, args, **kwargs)[source]¶ Loop over all CTF groups and launch a projection matching for each one. Note: Iterate ctf groups in reverse order to have same order as
in add_to docfiles from angular_class_average. #FIXME: check why reverse order is needed
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runReconstructionStep
(self, iterN, refN, program, method, args, suffix, **kwargs)[source]¶
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xmipp3.protocols.protocol_projmatch.projmatch_steps.
runStoreResolutionStep
(self, resolIterMd, resolIterMaxMd, sampling)[source]¶