tomo.protocols.protocol_ts_import module¶
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class
tomo.protocols.protocol_ts_import.
MDoc
(fileName, voltage=None, magnification=None, samplingRate=None)[source]¶ Bases:
object
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class
tomo.protocols.protocol_ts_import.
ProtImportTs
(**kwargs)[source]¶ Bases:
tomo.protocols.protocol_ts_import.ProtImportTsBase
Protocol to import tilt series.
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class
tomo.protocols.protocol_ts_import.
ProtImportTsBase
(**kwargs)[source]¶ Bases:
pwem.protocols.protocol_import.base.ProtImport
,tomo.protocols.protocol_base.ProtTomoBase
Base class for Tilt-Series and Tilt-SeriesMovies import protocols.
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ANGLES_FROM_FILENAME
= 'Filename'¶
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ANGLES_FROM_HEADER
= 'Header'¶
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ANGLES_FROM_MDOC
= 'Mdoc'¶
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ANGLES_FROM_RANGE
= 'Range'¶
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ANGLES_FROM_TLT
= 'Tlt'¶
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IMPORT_COPY_FILES
= 0¶
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IMPORT_FROM_FILES
= 0¶
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IMPORT_LINK_ABS
= 1¶
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IMPORT_LINK_REL
= 2¶
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MDOC_DATA_SOURCE
= False¶
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NOT_MDOC_GUI_COND
= 'filesPattern is None or (filesPattern is not None and ".mdoc" not in filesPattern)'¶
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accumDoses
= None¶
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acquisitions
= None¶
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copyOrLink
(source, destination)[source]¶ Calls the copy or link method chosen by the user in importAction option
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fileModified
(fileName, fileTimeout)[source]¶ Check if the fileName modification time is less than a given timeout. Params:
fileName: input filename that will be checked. fileTimeout: timeout
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getActions
()[source]¶ This method will allow that the ‘Stop import’ action to appears in the GUI when the user right-click in the protocol import box. It will allow a user to manually stop the streaming.
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getMatchingFiles
(fileTimeOut=None)[source]¶ Return an ordered dict with TiltSeries found in the files as key and a list of all tilt images of that series as value.
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meanDosesPerFrame
= None¶
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sRates
= None¶
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class
tomo.protocols.protocol_ts_import.
ProtImportTsMovies
(**kwargs)[source]¶ Bases:
tomo.protocols.protocol_ts_import.ProtImportTsBase
Protocol to import tilt series movies.