tomo.convert package¶
Submodules¶
Module contents¶
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tomo.convert.
getAnglesFromHeader
(tsImage)[source]¶ Extract the tilt angles from the tilt-series stack using the IMOD program: extracttilts.
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tomo.convert.
parseMdoc
(mdocFn)[source]¶ Parse the mdoc file and return a list with a dict key=value for each of the [Zvalue = X] sections :param mdocFn: Path to the mdoc file :return: list of dictonaries
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tomo.convert.
writeTiStack
(inputTiList, outputStackFn, outputTltFn=None, excludeList=None)[source]¶ Write a given list of tilt images as a single stack Params:
inputTiList: input list of tilted images. outputStackFn: output path where to write the stack. orderBy: column to sort by, by default tilt angle (ascending) excludeList: a list of indexes of the images to skip (starting at 1)- Results:
- A new stack file will be created and also a tlt file with tilt-angles