pyseg package

Module contents

class pyseg.Plugin[source]

Bases: pwem.Plugin

classmethod defineBinaries(env)[source]

Define required binaries in the given Environment.

classmethod getEnviron()[source]

Setup the environment variables needed to launch pyseg.

classmethod getPysegEnvActivation()[source]
classmethod runPySeg(protocol, program, args, cwd=None)[source]

Run pySeg command from a given protocol.