cryosparc2.protocols.protocol_base module

class cryosparc2.protocols.protocol_base.ProtCryosparcBase(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol

This class contains the common functions for all Cryosparc protocols.

convertInputStep()[source]

Create the input file in STAR format as expected by Relion. If the input particles comes from Relion, just link the file.

createFSC(idd, imgSet, vol)[source]
findLastIteration(jobName)[source]
setAborted()[source]

Set the status to aborted and updated the endTime.

setFilePattern(path)[source]
updateParticlePath(part, row)[source]