continuousflex.protocols.protocol_nma module

class continuousflex.protocols.protocol_nma.FlexProtNMA(**kwargs)[source]

Bases: continuousflex.protocols.protocol_nma_base.FlexProtNMABase

Flexible angular alignment using normal modes

animateModesStep(numberOfModes, amplitude, nFrames, downsample, pseudoAtomThreshold, pseudoAtomRadius)[source]
computeAtomShiftsStep(numberOfModes)[source]
computePdbModesStep(numberOfModes, RTBblockSize, cutoffStr)[source]
copyPdbStep(inputFn, localFn, isEM)[source]

Copy the input pdb file and also create a link ‘atoms.pdb’

createOutputStep()[source]
reformatPdbOutputStep(numberOfModes)[source]