pwem.utils module

pwem.utils.cleanFileName(fn, warn=True)

Cleans any character that later on might cause shell parsing errors like “(“, “)”, ” ” and warns about it if warn is true.

Parameters:

• fn – file to be cleaned
• warn – Optional (True). Logs

pwem.utils.convertPixToLength(samplingRate, length)

pwem.utils.getCmdPath(*paths)

pwem.utils.getPWEMPath(*paths)

pwem.utils.getTemplatePath(*paths)

pwem.utils.loadSetFromDb(dbName, dbPrefix='')

pwem.utils.runProgram(program, params)

Runs a em program setting its environment matching a prefix

pwem.utils.splitRange(minValue, maxValue, splitNum=10, roundTo=2)

returns a list of “splitNum” items with values ranging from minValue to maxValue, equally divided :param minValue: value to start from :param maxValue: value to stop :param splitNum: number of splits, limits included :param roundTo: default to 2, rounding decimal value :return: list with the split