dynamo package

Subpackages

• dynamo.convert package
  • Submodules
    • dynamo.convert.convert module
  • Module contents
• dynamo.protocols package
  • Submodules
    • dynamo.protocols.protocol_bin_tomograms module
    • dynamo.protocols.protocol_boxing module
    • dynamo.protocols.protocol_extraction module
    • dynamo.protocols.protocol_import_subtomos module
    • dynamo.protocols.protocol_import_tomograms module
    • dynamo.protocols.protocol_model_workflow module
    • dynamo.protocols.protocol_subBoxing module
    • dynamo.protocols.protocol_subtomo_MRA module
  • Module contents
• dynamo.viewers package
  • Submodules
    • dynamo.viewers.viewers_data module
    • dynamo.viewers.views_tkinter_tree module
  • Module contents

Submodules

• dynamo.bibtex module
• dynamo.constants module
• dynamo.wizards module

Module contents

class dynamo.Plugin

Bases: pwem.Plugin

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getDynamoProgram()

classmethod getEnviron()

Create the needed environment for Dynamo programs.

classmethod runDynamo(protocol, args, cwd=None)

Run Dynamo command from a given protocol.