xmipp3.wizards module

class xmipp3.wizards.ColorScaleWizard[source]

Bases: pwem.wizards.wizard.ColorScaleWizardBase

class xmipp3.wizards.XmippBoxSizeWizard[source]

Bases: pyworkflow.wizard.Wizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippCL2DNumberOfClassesWizard[source]

Bases: pyworkflow.wizard.Wizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippCTFWizard[source]

Bases: pwem.wizards.wizard.CtfWizard

getAutodownsampling(protocol, coeff=1.5)[source]
classmethod getView()[source]

This method should return the string value of the view in web that will respond to this wizard. This method only should be implemented in those wizards that have WEB_DJANGO environment defined.

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippDownsampleWizard[source]

Bases: pwem.wizards.wizard.DownsampleWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippFilterParticlesWizard[source]

Bases: pwem.wizards.wizard.FilterParticlesWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippFilterVolumesWizard[source]

Bases: pwem.wizards.wizard.FilterVolumesWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippGaussianParticlesWizard[source]

Bases: pwem.wizards.wizard.GaussianParticlesWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippGaussianVolumesWizard[source]

Bases: pwem.wizards.wizard.GaussianVolumesWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippParticleConsensusRadiusWizard[source]

Bases: pyworkflow.wizard.Wizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippParticleMaskRadiiWizard[source]

Bases: pwem.wizards.wizard.ParticlesMaskRadiiWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippParticleMaskRadiusWizard[source]

Bases: pwem.wizards.wizard.ParticleMaskRadiusWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippVolumeInnerRadiusWizard[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeMaskRadiusBasicWizard[source]

Bases: pwem.wizards.wizard.VolumeMaskRadiusWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
class xmipp3.wizards.XmippVolumeMaskRadiusProjMWizard[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard2[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeMaskRadiusWizard3[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusBasicWizard

class xmipp3.wizards.XmippVolumeOuterRadiusWizard[source]

Bases: xmipp3.wizards.XmippVolumeMaskRadiusWizard

class xmipp3.wizards.XmippVolumeRadiiProjMWizard[source]

Bases: xmipp3.wizards.XmippVolumeRadiiWizard

class xmipp3.wizards.XmippVolumeRadiiWizard[source]

Bases: pwem.wizards.wizard.VolumeMaskRadiiWizard

show(form)[source]

This will show up the wizard to select parameters. Params:

form: the protocol form, given access to to all parameters.
Some times the same wizard will modifify several elements in the form.
*params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.