xmipp3.protocols.protocol_preprocess.protocol_filter module

Protocols for particles filter operations.

class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippFilterHelper[source]

Bases: object

Filter operations such as: Fourier or Gaussian.

FM_ADAPTIVE_SOFT = 3
FM_BAND_PASS = 2
FM_BAYESIAN = 1
FM_CENTRAL = 4
FM_CTF = 3
FM_DAUB12 = 1
FM_DAUB20 = 2
FM_DAUB4 = 0
FM_HIGH_PASS = 1
FM_LOW_PASS = 0
FM_MEDIAN = 0
FM_REMOVE_SCALE = 0
FM_SOFT_THRESHOLDING = 2
classmethod getFreqDecay(protocol)[source]
classmethod getHighFreq(protocol)[source]
getInputSampling()[source]

Function to return the sampling rate of input objects. Should be implemented for filter volumes and particles.

classmethod getLowFreq(protocol)[source]
classmethod getModesCondition(filterMode, *filterModes)[source]
class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippProtFilterParticles(**kwargs)[source]

Bases: pwem.protocols.protocol_particles.ProtFilterParticles, xmipp3.protocols.protocol_preprocess.protocol_process.XmippProcessParticles

Apply Fourier filters to a set of particles

convertCTFXmippStep(ctfModel)[source]
filterStep(args)[source]
getFreqDecay()[source]
getHighFreq()[source]
getInputSampling()[source]
getLowFreq()[source]
tmpCTF = 'ctf.xmd'
class xmipp3.protocols.protocol_preprocess.protocol_filter.XmippProtFilterVolumes(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtFilterVolumes, xmipp3.protocols.protocol_preprocess.protocol_process.XmippProcessVolumes

Apply Fourier filters to a set of volumes

filterStep(args)[source]
getFreqDecay()[source]
getHighFreq()[source]
getInputSampling()[source]
getLowFreq()[source]