xmipp3.protocols.protocol_particle_pick_automatic module

class xmipp3.protocols.protocol_particle_pick_automatic.XmippParticlePickingAutomatic(**kwargs)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto, xmipp3.base.XmippProtocol

Protocol to pick particles automatically in a set of micrographs using previous training

copyInputFilesStep()[source]
filesToCopy = ['model_training.txt', 'model_svm.txt', 'model_pca_model.stk', 'model_rotpca_model.stk', 'model_particle_avg.xmp', 'config.xmd', 'templates.stk']
getCoordsDir()[source]
getInputMicrographs()[source]

Return the input micrographs that can be the same of the supervised picking or other ones selected by the user. (This can be used to pick a new set of micrographs with the same properties than a previous trained ones. )

getInputMicrographsPointer()[source]
getMethods(output)[source]
getSummary(coordSet)[source]
readCoordsFromMics(workingDir, micList, coordSet)[source]

This method should be implemented in subclasses to read the coordinates from a given list of micrographs.

readSetOfCoordinates(workingDir, coordSet)[source]