xmipp3.protocols.protocol_extract_particles_pairs module

class xmipp3.protocols.protocol_extract_particles_pairs.XmippProtExtractParticlesPairs(**kwargs)[source]

Bases: pwem.protocols.protocol_particles.ProtExtractParticlesPair, xmipp3.base.XmippProtocol

Protocol to extract particles from a set of tilted pairs coordinates

createMetadataImageStep()[source]
createOutputStep()[source]
extractParticlesStep(micId, baseMicName, fnCTF, micrographToExtract, micOps, doInvert, normalizeArgs, doBorders)[source]

Extract particles from one micrograph

getBoxScale()[source]

Computing the sampling factor between input and output. We should take into account the differences in sampling rate between micrographs used for picking and the ones used for extraction. The downsampling factor could also affect the resulting scale.

getCoordSampling()[source]
getCoords()[source]
getInputMicrographs()[source]

Return pairs of micrographs associated to the SetOfCoordinates or Other micrographs.

getMicNameOrId(mic)[source]
getMicSampling()[source]
getOutput()[source]
notOne(value)[source]
writePosFilesStep()[source]

Write the pos file for each micrograph in metadata format (both untilted and tilted).