xmipp3 package

Subpackages

Module contents

class xmipp3.Plugin[source]

Bases: pwem.Plugin

classmethod defineBinaries(env)[source]

Define the Xmipp binaries/source available tgz. In addition, define extra software needed by some Xmipp methods such as deepLearningToolkit. Scipion-defined software can be used as dependencies by using its name as string.

classmethod getEnviron(xmippFirst=True)[source]

Create the needed environment for Xmipp programs.

classmethod getMatlabEnviron(*toolPaths)[source]

Return an Environment prepared for launching Matlab scripts using the Xmipp binding.

classmethod runXmippProgram(program, args='')[source]

Internal shortcut function to launch a Xmipp program.

xmipp3.installDeepLearningToolkit(plugin, env)[source]