tomo.protocols.protocol_ts_base module

class tomo.protocols.protocol_ts_base.ProtTomoReconstruct(**kwargs)[source]

Bases: tomo.protocols.protocol_ts_base.ProtTsProcess

Base class for Tomogram reconstruction protocols.

class tomo.protocols.protocol_ts_base.ProtTsProcess(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Base class for Tilt-Series (images or movies) processing protocols. This class should be used by protocols that receive tilt-series as input and produce tilt-series as output. This class will contain some common functionality about the steps execution (also in streaming) and the output generation.

convertInputStep(inputId)[source]

To be implemented in subclasses.

createOutputStep()[source]
processTiltImageStep(tsId, tiltImageId, *args)[source]

To be implemented in subclasses.

processTiltSeriesStep(tsId)[source]

To be implemented in subclasses.