tomo.protocols.protocol_extract_coordinates module

class tomo.protocols.protocol_extract_coordinates.ProtTomoExtractCoords(**kwargs)[source]

Bases: tomo.protocols.protocol_base.ProtTomoPicking

Extract the coordinates information from a set of subtomograms.

This protocol is useful when we want to re-extract the subtomograms (maybe resulting from classification) with the original dimensions. It can be also handy to visualize the resulting subtomograms in their location on the tomograms.

createOutputStep()[source]
extractCoordinatesStep()[source]
getInputSubTomos()[source]
getInputTomos()[source]
getSuffix(suffix)[source]
getTmpOutputPath(suffix)[source]