resmap.protocols.protocol_resmap module

class resmap.protocols.protocol_resmap.ProtResMap(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

ResMap is software tool for computing the local resolution of 3D density maps from electron cryo-microscopy (cryo-EM).

Please find the manual at https://sourceforge.net/projects/resmap-latest

INPUT_HELP = ' Input volume(s) for ResMap.\n Required volume properties:\n 1. The particle must be centered in the volume.\n 2. The background must not been masked out.\n Desired volume properties:\n 1. The volume has not been filtered in any way (low-pass filtering, etc.)\n 2. The volume has a realistic noise spectrum.\n This is sometimes obtained by so-called amplitude correction.\n While a similar effect is often obtained by B-factor sharpening,\n please make sure that the spectrum does not blow up near Nyquist.\n '
convertInputStep(volLocation1, volLocation2)[source]

Convert input volume to .mrc as expected by ResMap.

createOutputStep()[source]
estimateResolutionStep(args)[source]

Call ResMap with the appropriate parameters.