relion.protocols.protocol_ctf_refinement module

class relion.protocols.protocol_ctf_refinement.ProtRelionCtfRefinement(**args)[source]

Bases: pwem.protocols.protocol_particles.ProtParticles, relion.protocols.protocol_base.ProtRelionBase

Wrapper protocol for the Relion’s CTF refinement.

convertInputStep()[source]

Create the input file in STAR format as expected by Relion. If the input particles comes from Relion, just link the file. Params:

particlesId: use this parameters just to force redo of convert if
the input particles are changed.
createGlobalInfo(filename)[source]
createGlobalInfoStep()[source]
createOutputStep()[source]
refineCtfStep()[source]