relion.protocols.protocol_autopick module

class relion.protocols.protocol_autopick.ProtRelionAutopickBase(**args)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto, relion.protocols.protocol_base.ProtRelionBase

Base class for auto-picking protocols in Relion.

getBoxSize()[source]

Return a reasonable box-size in pixels.

getCoordsDir()[source]
getInputMicrographs()[source]
getInputMicrographsPointer()[source]
getMicrographList()[source]

Return the list of micrographs (either a subset or the full set) that will be used for optimizing the parameters or the picking.

isRunOptimize()[source]
readCoordsFromMics(workingDir, micList, coordSet)[source]

Parse back the output star files and populate the SetOfCoordinates.

writeXmippCoords()[source]

Write the SetOfCoordinates as expected by Xmipp to be displayed with its GUI.

writeXmippOutputCoords()[source]