pyworkflow.gui.project.viewprotocols module

pyworkflow.gui.project.viewprotocols.INIT_REFRESH_SECONDS = 3

View with the protocols inside the main project window.

class pyworkflow.gui.project.viewprotocols.ProtocolTreeProvider(protocol)

Bases: pyworkflow.gui.tree.ObjectTreeProvider

Create the tree elements for a Protocol run

class pyworkflow.gui.project.viewprotocols.ProtocolsView(parent, windows, **args)

Bases: Tkinter.Frame

What you see when the “Protocols” tab is selected.

In the main project window there are three tabs: “Protocols | Data | Hosts”. This extended tk.Frame is what will appear when Protocols is on.

RUNS_CANVAS_NAME = 'runs_canvas'

createActionToolbar()

Prepare the buttons that will be available for protocol actions.

createContent()

Create the Protocols View for the Project. It has two panes:

Left: containing the Protocol classes tree Right: containing the Runs list

createRunItem(canvas, node)

createRunsGraph(parent)

createRunsTree(parent)

drawRunsGraph(reorganize=False)

executeProtocol(prot)

Function to execute a protocol called not directly from the Form “Execute” button.

getSelectedProtocol()

keyPressed(event)

refreshRuns(e=None, initRefreshCounter=True, checkPids=False)

Refresh the status of displayed runs. Params:

e: Tk event input initRefreshCounter: if True the refresh counter will be set to 3 secs

then only case when False is from _automaticRefreshRuns where the refresh time is doubled each time to avoid refreshing too often.

switchRunsView()

toggleDataSelection(prot, append)

updateProtocolsTree(protCfg)

updateRunsGraph(refresh=False, reorganize=False, checkPids=False)

updateRunsTree(refresh=False)

updateRunsTreeSelection()

class pyworkflow.gui.project.viewprotocols.RunBox(nodeInfo, canvas, text, x, y, bgColor, textColor)

Bases: pyworkflow.gui.canvas.TextBox

Just override TextBox move method to keep track of position changes in the graph.

move(dx, dy)

moveTo(x, y)

Move TextBox to a new position (x,y)

class pyworkflow.gui.project.viewprotocols.RunIOTreeProvider(parent, protocol, mapper)

Bases: pyworkflow.gui.tree.TreeProvider

Create the tree elements from a Protocol Run input/output childs

static getColumns()

getObjectActions(obj)

getObjectInfo(obj)

static getObjectLabel(obj, parent)

We will try to show in the list the string representation that is more readable for the user to pick the desired object.

static getObjectPreview(obj)

getObjects()

class pyworkflow.gui.project.viewprotocols.RunsTreeProvider(project, actionFunc)

Bases: pyworkflow.gui.tree.ProjectRunsTreeProvider

Provide runs info to populate tree

getActionsFromSelection()

Return the list of options available for selection.

getObjectActions(obj)

class pyworkflow.gui.project.viewprotocols.SearchProtocolWindow(parentWindow, **kwargs)

Bases: pyworkflow.gui.gui.Window

class pyworkflow.gui.project.viewprotocols.StepsTreeProvider(stepsList)

Bases: pyworkflow.gui.tree.TreeProvider

Create the tree elements for a Protocol run

static getObjectInfo(obj)

static getObjectPreview(obj)

getObjects()

class pyworkflow.gui.project.viewprotocols.StepsWindow(title, parentWindow, protocol, **args)

Bases: pyworkflow.gui.browser.BrowserWindow

pyworkflow.gui.project.viewprotocols.inspectObj(obj, filename, prefix='', maxDeep=5, inspectDetail=2, memoryDict={})

Creates a .CSV file in the filename path with all its members and recursibely with a certain maxDeep, if maxDeep=0 means no maxDeep (untils all members are inspected).

inspectDetail can be:

• 1: All attributes are shown
• 2: All attributes are shown and iterable values are also inspected

prefix and memoryDict will be updated in the recursibe entries:

• prefix is to compond the two first columns (DEEP and Tree)
• memoryDict is a dictionary with the memory adress and an identifier

pyworkflow.gui.project.viewprotocols.populateTree(self, tree, treeItems, prefix, obj, subclassedDict, level=0)