Scipion

Set up

  • Installing Scipion v2.0
  • Scipion configuration
  • Host configuration
  • Troubleshooting

User documentation

  • Graphical interface manuals
  • Tutorials
  • Processing How To’s

Facilities

  • Streaming Processing
  • Streaming workflows
  • Tutorial for Facilities

Developer documentation

  • Developers Page

API Documentation

  • pyworkflow package
    • pyworkflow.apps package
    • pyworkflow.em package
      • pyworkflow.em.convert package
      • pyworkflow.em.metadata package
      • pyworkflow.em.protocol package
        • pyworkflow.em.protocol.monitors package
        • pyworkflow.em.protocol.protocol_export package
        • pyworkflow.em.protocol.protocol_import package
        • pyworkflow.em.protocol.parallel module
        • pyworkflow.em.protocol.protocol module
        • pyworkflow.em.protocol.protocol_2d module
        • pyworkflow.em.protocol.protocol_3d module
        • pyworkflow.em.protocol.protocol_align_movies module
        • pyworkflow.em.protocol.protocol_alignment_assign module
        • pyworkflow.em.protocol.protocol_batch module
        • pyworkflow.em.protocol.protocol_classes_consensus module
        • pyworkflow.em.protocol.protocol_create_stream_data module
        • pyworkflow.em.protocol.protocol_ctf_assign module
        • pyworkflow.em.protocol.protocol_extract_coordinates module
        • pyworkflow.em.protocol.protocol_micrographs module
        • pyworkflow.em.protocol.protocol_movies module
        • pyworkflow.em.protocol.protocol_particles module
        • pyworkflow.em.protocol.protocol_particles_picking module
        • pyworkflow.em.protocol.protocol_pdf_report module
        • pyworkflow.em.protocol.protocol_sets module
        • pyworkflow.em.protocol.protocol_tests module
        • pyworkflow.em.protocol.protocol_tiltpairs module
      • pyworkflow.em.viewers package
      • pyworkflow.em.constants module
      • pyworkflow.em.data module
      • pyworkflow.em.data_tiltpairs module
      • pyworkflow.em.wizard module
      • pyworkflow.em.wizards module
    • pyworkflow.gui package
    • pyworkflow.install package
    • pyworkflow.mapper package
    • pyworkflow.project package
    • pyworkflow.protocol package
    • pyworkflow.utils package
    • pyworkflow.webservices package
    • pyworkflow.object module
    • pyworkflow.plugin module
    • pyworkflow.viewer module
    • pyworkflow.wizard module

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  • pyworkflow package »
  • pyworkflow.em package »
  • pyworkflow.em.protocol package »
  • pyworkflow.em.protocol.protocol_import package
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pyworkflow.em.protocol.protocol_import package¶

Submodules¶

  • pyworkflow.em.protocol.protocol_import.base module
  • pyworkflow.em.protocol.protocol_import.coordinates module
  • pyworkflow.em.protocol.protocol_import.ctfs module
  • pyworkflow.em.protocol.protocol_import.dataimport module
  • pyworkflow.em.protocol.protocol_import.images module
  • pyworkflow.em.protocol.protocol_import.masks module
  • pyworkflow.em.protocol.protocol_import.micrographs module
  • pyworkflow.em.protocol.protocol_import.particles module
  • pyworkflow.em.protocol.protocol_import.sequence module
  • pyworkflow.em.protocol.protocol_import.volumes module

Module contents¶

Sub-packages containing different sub-modules to import different type of objects.

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