pyworkflow.em package

Subpackages

• pyworkflow.em.convert package
  • Submodules
    • pyworkflow.em.convert.atom_struct module
    • pyworkflow.em.convert.headers module
    • pyworkflow.em.convert.image_handler module
    • pyworkflow.em.convert.sequence module
    • pyworkflow.em.convert.symmetry module
    • pyworkflow.em.convert.transformations module
      • Requirements
    • pyworkflow.em.convert.utils module
  • Module contents
• pyworkflow.em.metadata package
  • Submodules
    • pyworkflow.em.metadata.classes module
    • pyworkflow.em.metadata.constants module
    • pyworkflow.em.metadata.functions module
    • pyworkflow.em.metadata.utils module
  • Module contents
• pyworkflow.em.protocol package
  • Subpackages
    • pyworkflow.em.protocol.monitors package
      • Submodules
        • pyworkflow.em.protocol.monitors.getnifs module
        • pyworkflow.em.protocol.monitors.protocol_monitor module
        • pyworkflow.em.protocol.monitors.protocol_monitor_2d_streamer module
        • pyworkflow.em.protocol.monitors.protocol_monitor_ctf module
        • pyworkflow.em.protocol.monitors.protocol_monitor_movie_gain module
        • pyworkflow.em.protocol.monitors.protocol_monitor_summary module
        • pyworkflow.em.protocol.monitors.protocol_monitor_system module
        • pyworkflow.em.protocol.monitors.pynvml module
        • pyworkflow.em.protocol.monitors.report_html module
        • pyworkflow.em.protocol.monitors.summary_provider module
      • Module contents
    • pyworkflow.em.protocol.protocol_export package
      • Submodules
        • pyworkflow.em.protocol.protocol_export.protocol_export_emdb module
      • Module contents
    • pyworkflow.em.protocol.protocol_import package
      • Submodules
        • pyworkflow.em.protocol.protocol_import.base module
        • pyworkflow.em.protocol.protocol_import.coordinates module
        • pyworkflow.em.protocol.protocol_import.ctfs module
        • pyworkflow.em.protocol.protocol_import.dataimport module
        • pyworkflow.em.protocol.protocol_import.images module
        • pyworkflow.em.protocol.protocol_import.masks module
        • pyworkflow.em.protocol.protocol_import.micrographs module
        • pyworkflow.em.protocol.protocol_import.particles module
        • pyworkflow.em.protocol.protocol_import.sequence module
        • pyworkflow.em.protocol.protocol_import.volumes module
      • Module contents
  • Submodules
    • pyworkflow.em.protocol.parallel module
    • pyworkflow.em.protocol.protocol module
    • pyworkflow.em.protocol.protocol_2d module
    • pyworkflow.em.protocol.protocol_3d module
    • pyworkflow.em.protocol.protocol_align_movies module
    • pyworkflow.em.protocol.protocol_alignment_assign module
    • pyworkflow.em.protocol.protocol_batch module
    • pyworkflow.em.protocol.protocol_classes_consensus module
    • pyworkflow.em.protocol.protocol_create_stream_data module
    • pyworkflow.em.protocol.protocol_ctf_assign module
    • pyworkflow.em.protocol.protocol_extract_coordinates module
    • pyworkflow.em.protocol.protocol_micrographs module
    • pyworkflow.em.protocol.protocol_movies module
    • pyworkflow.em.protocol.protocol_particles module
    • pyworkflow.em.protocol.protocol_particles_picking module
    • pyworkflow.em.protocol.protocol_pdf_report module
    • pyworkflow.em.protocol.protocol_sets module
    • pyworkflow.em.protocol.protocol_tests module
    • pyworkflow.em.protocol.protocol_tiltpairs module
  • Module contents
• pyworkflow.em.viewers package
  • Submodules
    • pyworkflow.em.viewers.chimera_server module
    • pyworkflow.em.viewers.plotter module
    • pyworkflow.em.viewers.showj module
    • pyworkflow.em.viewers.viewer_chimera module
    • pyworkflow.em.viewers.viewer_fsc module
    • pyworkflow.em.viewers.viewer_localres module
    • pyworkflow.em.viewers.viewer_monitors module
    • pyworkflow.em.viewers.viewer_pdf module
    • pyworkflow.em.viewers.viewer_sequence module
    • pyworkflow.em.viewers.viewer_vmd module
    • pyworkflow.em.viewers.viewer_volumes module
    • pyworkflow.em.viewers.viewers_data module
    • pyworkflow.em.viewers.viewers_protocols module
    • pyworkflow.em.viewers.views module
  • Module contents

Submodules

• pyworkflow.em.constants module
• pyworkflow.em.data module
• pyworkflow.em.data_tiltpairs module
• pyworkflow.em.wizard module
• pyworkflow.em.wizards module

Module contents

This modules contains classes related with EM

class pyworkflow.em.Domain

Bases: pyworkflow.plugin.Domain

class pyworkflow.em.Plugin

Bases: pyworkflow.plugin.Plugin

pyworkflow.em.findClass(className)

pyworkflow.em.findSubClasses(classDict, className)

Find all subclasses of a give className.

pyworkflow.em.findViewers(className, environment)

Find the available viewers for this class.

pyworkflow.em.findWizards(protocol, environment)

Find availables wizards for this class. Returns:

a dict with the paramName and wizards for this class.

pyworkflow.em.findWizardsFromDict(protocol, environment, wizDict)

pyworkflow.em.getPreferredViewers(className)

Find and import the preferred viewers for this class.

pyworkflow.em.loadSetFromDb(dbName, dbPrefix='')

pyworkflow.em.runProgram(program, params)