pwem.wizards.wizards module¶
This module is for Actual wizards to be able to be discovered from the Domain. wizard.py is left for wizard models and base classes.
- class pwem.wizards.wizards.ChangeOriginSamplingWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.GetStructureChainsWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
Load an atomic structure, parse chain related information as name, number of residues, list of aminoacids (or other residues)
- classmethod getModelsChainsStep(protocol)[source]¶
Returns (1) list with the information {“model”: %d, “chain”: “%s”, “residues”: %d} (modelsLength) (2) list with residues, position and chain (modelsFirstResidue)
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.ImportAcquisitionWizard[source]¶
Bases:
pwem.wizards.wizard.EmWizard
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.ImportCoordinatesBoxSizeWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
- classmethod show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.ImportOriginVolumeWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.PythonFormulaeWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
Assist in the creation of python formula to be evaluated. In Steps
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.
- class pwem.wizards.wizards.SelectAttributeWizard[source]¶
Bases:
pyworkflow.wizard.Wizard
Base wizard for selecting an attribute from those contained in the items of a given input inputParam: Name of the input parameter where the items are stored outputParam:
- getInputOutput(form)[source]¶
Retrieving input and output corresponding to the protocol where the wizard is used
- show(form, *params)[source]¶
This will show up the wizard to select parameters. Params:
- form: the protocol form, given access to to all parameters.
Some times the same wizard will modify several elements in the form.
- *params: a list of params to modify, sometimes the wizard can
be generic and can be used for different parameters in the same form.