pwem.protocols.protocol_import.sequence module¶
- class pwem.protocols.protocol_import.sequence.ProtImportSequence(**args)[source]¶
Bases:
ProtImportFiles
Protocol to import an aminoacid/nucleotide sequence file to the project
- IMPORT_FROM_FILES = 2¶
- IMPORT_FROM_GENEBANK = 3¶
- IMPORT_FROM_NUCLEOTIDE_FILES = 2¶
- IMPORT_FROM_NUCLEOTIDE_PLAIN_TEXT = 0¶
- IMPORT_FROM_NUCLEOTIDE_STRUCTURE = 1¶
- IMPORT_FROM_PLAIN_TEXT = 0¶
- IMPORT_FROM_STRUCTURE = 1¶
- IMPORT_FROM_UNIPROT = 3¶
- IMPORT_STRUCTURE_FROM_FILES = 1¶
- IMPORT_STRUCTURE_FROM_ID = 0¶
- sequenceDatabaseDownloadStep(sequenceDB)[source]¶
Download UniProt/GeneBank sequence from its respective database
- url = 'http://www.uniprot.org/uniprot/'¶