pwem.protocols.protocol_import.dataimport module

class pwem.protocols.protocol_import.dataimport.ScipionImport(protocol, sqliteFile)[source]

Bases: object

Import

getMicCTF(mic)[source]

Retrieve the CTF associated to this micrograph.

importMicrographs()[source]

Import a SetOfMicrographs from a given sqlite file.

importParticles()[source]

Import particles from a metadata ‘images.xmd’

loadAcquisitionInfo()[source]

Return a dictionary with acquisition values and the sampling rate information. In the case of Scipion, these values will be read from the ‘Properties’ table of the particles.sqlite file.

validate()[source]

Try to find errors on import.

validateMicrographs()[source]
validateParticles()[source]