pwem.protocols.protocol_export.protocol_export_DB module¶
- class pwem.protocols.protocol_export.protocol_export_DB.ProtExportDataBases(**kwargs)[source]¶
Bases:
EMProtocol
generates files for elements to submit structures to EMDB/PDB. Since mmcif/pdb is only partially supported by some software the protocol creates 4 versions of the atomic struct file with the hope that at least one of them will work.
- ADDITIONALVOLUMEDIR = 'addMaps'¶
- ADDITIONALVOLUMENAME = 'map_%02d.mrc'¶
- COORDINATEFILENAME = 'coordinates.cif'¶
- HALFVOLUMENAME = 'half_map_%d.mrc'¶
- MASKDIR = 'masks'¶
- MASKNAME = 'mask_%02d.mrc'¶
- SYMPLIFIED_STRUCT = 'symplified_atom_structure.cif'¶
- VOLUMENAME = 'main_map.mrc'¶