pwem.protocols.protocol_export.protocol_export_DB module

class pwem.protocols.protocol_export.protocol_export_DB.ProtExportDataBases(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol

generates files for elements to submit structures to EMDB/PDB. Since mmcif/pdb is only partially supported by some software the protocol creates 4 versions of the atomic struct file with the hope that at least one of them will work.

ADDITIONALVOLUMEDIR = 'addMaps'
ADDITIONALVOLUMENAME = 'map_%02d.mrc'
COORDINATEFILENAME = 'coordinates.cif'
HALFVOLUMENAME = 'half_map_%d.mrc'
MASKDIR = 'masks'
MASKNAME = 'mask_%02d.mrc'
SYMPLIFIED_STRUCT = 'symplified_atom_structure.cif'
VOLUMENAME = 'main_map.mrc'
createDirectoryStep(dirPath)[source]
exportAdditionalVolumeStep()[source]
exportAtomStructStep()[source]
exportFSCStep()[source]
exportImageStep()[source]
exportMasksStep()[source]
exportVolumeStep()[source]
getFnPath(label='volume')[source]