imod.utils module¶
This module contains utils functions for IMOD protocols
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imod.utils.
format3DCoordinatesList
(coordFilePath, xDim, yDim)[source]¶ This method takes the IMOD-based fiducial coordinates file path and returns a list containing each coordinate for each fiducial belonging to the tilt-series
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imod.utils.
formatAngleFile
(inputTs, angleFilePath)[source]¶ This method takes a list containing the angles for each tilt-image belonging to the tilt-series and writes the IMOD-based angle file at the given location
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imod.utils.
formatAngleList
(tltFilePath)[source]¶ This method takes the IMOD-based angle file path and returns a list containing the angles for each tilt-image belonging to the tilt-series
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imod.utils.
formatFiducialList
(fiducialFilePath)[source]¶ This method takes the IMOD-based fiducial model file path and returns a list containing the coordinates of each fiducial for each tilt-image belonging to the tilt-series
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imod.utils.
formatFiducialResidList
(fiducialFilePath)[source]¶ This method takes the IMOD-based fiducial residual model file path and returns a list containing the coordinates and residual values of each fiducial for each tilt-image belonging to the tilt-series. Since IMOD establishes a float value for each coordinate the are parsed to int