imod.protocols.protocol_fiducialAlignment module

class imod.protocols.protocol_fiducialAlignment.ProtImodFiducialAlignment(**kwargs)[source]

Bases: pwem.protocols.protocol.EMProtocol, tomo.protocols.protocol_base.ProtTomoBase

Construction of a fiducial model and alignment of tilt-series based on the IMOD procedure. More info:

computeFiducialAlignmentStep(tsObjId)[source]
computeOutputInterpolatedStackStep(tsObjId)[source]
computeOutputModelsStep(tsObjId)[source]
computeOutputStackStep(tsObjId)[source]
convertInputStep(tsObjId)[source]
createOutputStep()[source]
generateFiducialModelStep(tsObjId)[source]
generateFiducialSeedStep(tsObjId)[source]
generateTrackComStep(tsObjId)[source]
getOutputFiducialModelGaps()[source]
getOutputFiducialModelNoGaps()[source]
getOutputInterpolatedSetOfTiltSeries()[source]
getOutputSetOfCoordinates3Ds()[source]
getOutputSetOfTiltSeries()[source]
translateFiducialPointModelStep(tsObjId)[source]
translateTrackCom(ts, paramsDict)[source]