eman2 package

Subpackages

• eman2.convert package
  • Submodules
    • eman2.convert.convert module
    • eman2.convert.dataimport module
  • Module contents
• eman2.protocols package
  • Submodules
    • eman2.protocols.protocol_autopick_boxer module
    • eman2.protocols.protocol_autopick_sparx module
    • eman2.protocols.protocol_boxing module
    • eman2.protocols.protocol_ctf module
    • eman2.protocols.protocol_initialmodel module
    • eman2.protocols.protocol_initialmodel_sgd module
    • eman2.protocols.protocol_reconstruct module
    • eman2.protocols.protocol_refine2d module
    • eman2.protocols.protocol_refine2d_bispec module
    • eman2.protocols.protocol_refineasy module
    • eman2.protocols.protocol_tiltvalidate module
  • Module contents
• eman2.viewers package
  • Submodules
    • eman2.viewers.viewers module
  • Module contents

Submodules

• eman2.bibtex module
• eman2.constants module
• eman2.e2converter module
• eman2.e2ih module
• eman2.wizards module

Module contents

class eman2.Plugin

Bases: pwem.Plugin

classmethod createEmanProcess(script='e2converter.py', args=None, direc='.')

Open a new Process with all EMAN environment (python…etc) that will serve as an adaptor to use EMAN library

classmethod defineBinaries(env)

Define required binaries in the given Environment.

classmethod getBoxerCommand(boxerVersion='new')

classmethod getEmanCommand(program, args, python=False)

classmethod getEnviron()

Setup the environment variables needed to launch Eman.

classmethod getProgram(program, python=False)

Return the program binary that will be used.

classmethod isVersion(version='2.31')