continuousflex.protocols.protocol_nma_alignment module

class continuousflex.protocols.protocol_nma_alignment.FlexProtAlignmentNMA(**kwargs)[source]

Bases: pwem.protocols.protocol_3d.ProtAnalysis3D

Protocol for flexible angular alignment.

convertInputStep(atomsFn)[source]
copyDeformationsStep(deformationMd)[source]
createOutputStep()[source]
getInputPdb()[source]

Return the Pdb object associated with the normal modes.

performNmaStep(atomsFn, modesFn)[source]
writeModesMetaData()[source]

Iterate over the input SetOfNormalModes and write the proper Xmipp metadata. Take into account a possible selection of modes (This option is just a shortcut for testing. The recommended way is just create a subset from the GUI and use that as input)