cistem.protocols.protocol_picking module

class cistem.protocols.protocol_picking.CistemProtFindParticles(**kwargs)[source]

Bases: pwem.protocols.protocol_particles_picking.ProtParticlePickingAuto

Protocol to pick particles in a set of micrographs using cisTEM.

convertInputStep(micsId, refsId)[source]
createOutputStep()[source]
getInputMicrographs()[source]
getInputReferences()[source]
readCoordsFromMics(extraDir, micList, coordSet)[source]

This method should be implemented in subclasses to read the coordinates from a given list of micrographs.