ccp4.protocols.protocol_refmac module¶
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class
ccp4.protocols.protocol_refmac.
CCP4ProtRunRefmac
(**kwargs)[source]¶ Bases:
pwem.protocols.protocol.EMProtocol
Automatic refinement program in Fourier space of macromolecule structures regarding electron density maps. Generates files for volumes and FSCs to submit structures to EMDB
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OutPdbFileName
= 'refmac-refined.pdb'¶
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PDBSET
= 'pdbset'¶
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REFMAC
= 'refmac5'¶
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createMaskLogFileName
= 'mask.log'¶
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refineLogFileName
= 'refine.log'¶
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refmacMap2MtzScriptFileName
= 'map2mtz_refmac.sh'¶
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refmacRefineScriptFileName
= 'refine_refmac.sh'¶
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classmethod
validateInstallation
()[source]¶ Check if the installation of this protocol is correct. By default, we will check if the protocols’ package provide a validateInstallation function and use it. Returning an empty list means that the installation is correct and there are not errors. If some errors are found, a list with the error messages will be returned.
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