All modules for which code is available
- appion
- atomstructutils
- atomstructutils.protocols.protocol_average_subunits
- atomstructutils.protocols.protocol_convertsymmetry
- atomstructutils.protocols.protocol_operate
- atomstructutils.viewers.viewer
- atomstructutils.viewers.viewer_protocol_convertsymmetry
- atomstructutils.wizards
- atsas
- bamfordlab
- bsoft
- bsoft.convert
- bsoft.protocols.protocol_bfilter
- bsoft.protocols.protocol_blocres
- bsoft.protocols.protocol_particle_pick
- bsoft.viewers.bsoft_viewers
- bsoft.wizards
- ccp4
- ccp4.convert
- ccp4.protocols.protocol_coot
- ccp4.protocols.protocol_refmac
- ccp4.viewers.viewer_coot
- ccp4.viewers.viewer_refmac
- chimera
- chimera.editList
- chimera.getchimera
- chimera.protocols.protocol_base
- chimera.protocols.protocol_contacts
- chimera.protocols.protocol_fit
- chimera.protocols.protocol_modeller_search
- chimera.protocols.protocol_operate
- chimera.protocols.protocol_restore
- chimera.protocols.protocol_subtraction_maps
- chimera.utils
- chimera.viewers.viewer
- chimera.viewers.viewer_contacts
- chimera.wizards
- cistem
- cistem.convert.convert
- cistem.convert.dataimport
- cistem.protocols.program_ctffind
- cistem.protocols.protocol_ctffind
- cistem.protocols.protocol_picking
- cistem.protocols.protocol_refine2d
- cistem.protocols.protocol_ts_ctffind
- cistem.protocols.protocol_unblur
- cistem.viewers
- cistem.wizards
- continuousflex
- continuousflex.protocols.convert
- continuousflex.protocols.data
- continuousflex.protocols.pdb.protocol_convert_pdb
- continuousflex.protocols.pdb.protocol_pseudoatoms
- continuousflex.protocols.pdb.protocol_pseudoatoms_base
- continuousflex.protocols.protocol_apply_volumeset_alignment
- continuousflex.protocols.protocol_batch_cluster
- continuousflex.protocols.protocol_batch_cluster_vol
- continuousflex.protocols.protocol_denoise_volumes
- continuousflex.protocols.protocol_image_synthesize
- continuousflex.protocols.protocol_missing_wedge_filling
- continuousflex.protocols.protocol_nma
- continuousflex.protocols.protocol_nma_alignment
- continuousflex.protocols.protocol_nma_alignment_vol
- continuousflex.protocols.protocol_nma_base
- continuousflex.protocols.protocol_nma_choose
- continuousflex.protocols.protocol_nma_dimred
- continuousflex.protocols.protocol_nma_dimred_vol
- continuousflex.protocols.protocol_pdb_dimred
- continuousflex.protocols.protocol_structure_mapping
- continuousflex.protocols.protocol_subtomogram_averaging
- continuousflex.protocols.protocol_subtomograms_classify
- continuousflex.protocols.protocol_subtomogrmas_synthesize
- continuousflex.protocols.utilities.bm4d
- continuousflex.protocols.utilities.dynamo
- continuousflex.protocols.utilities.mwr_wrapper
- continuousflex.protocols.utilities.spider_files3
- continuousflex.viewers.nma_gui.matplotlib_point_path
- continuousflex.viewers.nma_gui.matplotlib_point_selector
- continuousflex.viewers.nma_gui.tk_clustering
- continuousflex.viewers.nma_gui.tk_trajectories
- continuousflex.viewers.nma_plotter
- continuousflex.viewers.nma_vol_gui.PointPathVol
- continuousflex.viewers.nma_vol_gui.PointSelectorVol
- continuousflex.viewers.nma_vol_gui.tk_clustering_vol
- continuousflex.viewers.nma_vol_gui.tk_trajectories_vol
- continuousflex.viewers.plotter
- continuousflex.viewers.plotter_vol
- continuousflex.viewers.viewer_image_synthesize
- continuousflex.viewers.viewer_nma
- continuousflex.viewers.viewer_nma_alignment
- continuousflex.viewers.viewer_nma_alignment_vol
- continuousflex.viewers.viewer_nma_dimred
- continuousflex.viewers.viewer_nma_dimred_vol
- continuousflex.viewers.viewer_pdb_dimred
- continuousflex.viewers.viewer_structure_mapping
- continuousflex.viewers.viewer_subtomograms_classify
- continuousflex.viewers.viewer_subtomograms_synthesize
- cryocare
- cryocare.objects
- cryocare.protocols.protocol_load_model
- cryocare.protocols.protocol_predict
- cryocare.protocols.protocol_prepare_training_data
- cryocare.protocols.protocol_training
- cryocare.utils
- cryocare.wizards
- cryoef
- cryosparc2
- cryosparc2.convert.convert
- cryosparc2.protocols.protocol_base
- cryosparc2.protocols.protocol_cryorefine
- cryosparc2.protocols.protocol_cryosparc2d
- cryosparc2.protocols.protocol_cryosparc_3D_classification
- cryosparc2.protocols.protocol_cryosparc_ab
- cryosparc2.protocols.protocol_cryosparc_global_ctf_refinement
- cryosparc2.protocols.protocol_cryosparc_helical_refinement
- cryosparc2.protocols.protocol_cryosparc_homogeneous_refine
- cryosparc2.protocols.protocol_cryosparc_local_ctf_refinement
- cryosparc2.protocols.protocol_cryosparc_naive_local_refine
- cryosparc2.protocols.protocol_cryosparc_new_local_refine
- cryosparc2.protocols.protocol_cryosparc_new_nonuniform_refine
- cryosparc2.protocols.protocol_cryosparc_nonuniform_refine
- cryosparc2.protocols.protocol_cryosparc_part_subtract
- cryosparc2.protocols.protocol_cryosparc_sharppening
- cryosparc2.protocols.protocol_cryosparc_symmetry_expansion
- cryosparc2.utils
- cryosparc2.viewers.viewer_2Dclassify
- cryosparc2.viewers.viewer_initialmodel
- cryosparc2.viewers.viewer_partsubtract
- cryosparc2.viewers.viewer_refinement
- cryosparc2.wizards
- deepfinder
- deepfinder.constants
- deepfinder.convert
- deepfinder.objects
- deepfinder.protocols.protocol_annotation
- deepfinder.protocols.protocol_base
- deepfinder.protocols.protocol_cluster
- deepfinder.protocols.protocol_import_coordinates
- deepfinder.protocols.protocol_load_training_model
- deepfinder.protocols.protocol_segment
- deepfinder.protocols.protocol_target_generation
- deepfinder.protocols.protocol_train
- deepfinder.protocols.protocol_utilities
- deepfinder.viewers.particle_annotator_tomo_viewer
- deepfinder.viewers.particle_annotator_tree
- deepfinder.viewers.viewer_deepfinder
- dynamo
- dynamo.convert.convert
- dynamo.protocols.protocol_bin_tomograms
- dynamo.protocols.protocol_boxing
- dynamo.protocols.protocol_extraction
- dynamo.protocols.protocol_import_subtomos
- dynamo.protocols.protocol_import_tomograms
- dynamo.protocols.protocol_model_workflow
- dynamo.protocols.protocol_subBoxing
- dynamo.protocols.protocol_subtomo_MRA
- dynamo.viewers.viewers_data
- dynamo.viewers.views_tkinter_tree
- dynamo.wizards
- eman2
- eman2.convert.convert
- eman2.convert.dataimport
- eman2.protocols.protocol_autopick_boxer
- eman2.protocols.protocol_boxing
- eman2.protocols.protocol_ctf
- eman2.protocols.protocol_initialmodel
- eman2.protocols.protocol_initialmodel_sgd
- eman2.protocols.protocol_reconstruct
- eman2.protocols.protocol_refine2d
- eman2.protocols.protocol_refine2d_bispec
- eman2.protocols.protocol_refineasy
- eman2.protocols.protocol_tiltvalidate
- eman2.viewers.viewers
- emantomo
- emantomo.convert.convert
- emantomo.convert.dataimport
- emantomo.protocols.protocol_align_ts
- emantomo.protocols.protocol_tomo_boxing
- emantomo.protocols.protocol_tomo_boxing_convnet
- emantomo.protocols.protocol_tomo_extraction
- emantomo.protocols.protocol_tomo_fill_mw
- emantomo.protocols.protocol_tomo_initialmodel
- emantomo.protocols.protocol_tomo_reconstruction
- emantomo.protocols.protocol_tomo_subtomogram_refinement
- emantomo.protocols.protocol_tomo_template_match
- emantomo.viewers.viewers_data
- emantomo.viewers.views_tkinter_tree
- emantomo.wizards
- emfacilities
- emfacilities.protocols.getnifs
- emfacilities.protocols.protocol_monitor
- emfacilities.protocols.protocol_monitor_2d_streamer
- emfacilities.protocols.protocol_monitor_ctf
- emfacilities.protocols.protocol_monitor_movie_gain
- emfacilities.protocols.protocol_monitor_summary
- emfacilities.protocols.protocol_monitor_system
- emfacilities.protocols.pynvml
- emfacilities.protocols.report_html
- emfacilities.protocols.report_influx
- emfacilities.protocols.summary_provider
- emfacilities.protocols.transport
- emfacilities.viewers.viewer_monitors
- emtable.metadata
- emxlib
- emxlib.convert.convert
- emxlib.convert.dataimport
- emxlib.protocols.protocol_export
- emxlib.utils
- emxlib.viewers.emxlib_viewers
- fsc3d
- gautomatch
- gctf
- gctf.convert.convert
- gctf.convert.dataimport
- gctf.protocols.program_gctf
- gctf.protocols.protocol_gctf
- gctf.protocols.protocol_gctf_refine
- gctf.protocols.protocol_ts_gctf
- gctf.viewers
- gctf.wizards
- imod
- imod.file_handlers
- imod.protocols.protocol_applyTransformationMatrix
- imod.protocols.protocol_auto3d
- imod.protocols.protocol_base
- imod.protocols.protocol_ctfCorrection
- imod.protocols.protocol_ctfEstimation_automatic
- imod.protocols.protocol_ctfEstimation_manual
- imod.protocols.protocol_doseFilter
- imod.protocols.protocol_etomo
- imod.protocols.protocol_excludeViews
- imod.protocols.protocol_fiducialAlignment
- imod.protocols.protocol_fiducialModel
- imod.protocols.protocol_goldBeadEraser
- imod.protocols.protocol_goldBeadPicker3d
- imod.protocols.protocol_importSetOfCTFTomoSeries
- imod.protocols.protocol_importSetOfTM
- imod.protocols.protocol_tomoNormalization
- imod.protocols.protocol_tomoProjection
- imod.protocols.protocol_tomoReconstruction
- imod.protocols.protocol_tsNormalization
- imod.protocols.protocol_xCorrPrealignment
- imod.protocols.protocol_xRaysEraser
- imod.utils
- imod.viewers.viewers
- imod.viewers.views_tkinter_tree
- jjsoft
- jjsoft.protocols.protocol_align_ts
- jjsoft.protocols.protocol_denoise_tomogram
- jjsoft.protocols.protocol_motion_compensation
- jjsoft.protocols.protocol_reconstruct_tomogram
- jjsoft.wizards
- localrec
- localrec.progressbar
- localrec.protocols.protocol_filter_subparticles
- localrec.protocols.protocol_localized
- localrec.protocols.protocol_localized_extraction
- localrec.protocols.protocol_localized_set_origin
- localrec.protocols.protocol_localized_stitch
- localrec.protocols.protocol_localized_subset
- localrec.utils
- localrec.viewers.viewer
- locscale
- motioncorr
- motioncorr.convert
- motioncorr.protocols.protocol_motioncorr
- motioncorr.protocols.protocol_ts_motioncor
- motioncorr.viewers
- novactf
- phenix
- phenix.protocols.protocol_dock_in_map
- phenix.protocols.protocol_emringer
- phenix.protocols.protocol_molprobity
- phenix.protocols.protocol_real_space_refine
- phenix.protocols.protocol_refinement_base
- phenix.protocols.protocol_search_fit
- phenix.protocols.protocol_superpose_pdbs
- phenix.protocols.protocol_validation_cryoem
- phenix.viewers.viewer_dock_in_map
- phenix.viewers.viewer_emringer
- phenix.viewers.viewer_molprobity
- phenix.viewers.viewer_real_space_refine
- phenix.viewers.viewer_refinement_base
- phenix.viewers.viewer_search_fit
- phenix.viewers.viewer_superpose_pdbs
- phenix.viewers.viewer_validation_cryoem
- phenix.wizards
- pwem
- pwem.convert.atom_struct
- pwem.convert.headers
- pwem.convert.sequence
- pwem.convert.symmetry
- pwem.convert.utils
- pwem.emlib.image.image_handler
- pwem.emlib.metadata.utils
- pwem.objects.data
- pwem.objects.data_tiltpairs
- pwem.protocols.parallel
- pwem.protocols.protocol
- pwem.protocols.protocol_2d
- pwem.protocols.protocol_3d
- pwem.protocols.protocol_align_movies
- pwem.protocols.protocol_alignment_assign
- pwem.protocols.protocol_alignment_invertHand
- pwem.protocols.protocol_batch
- pwem.protocols.protocol_classes_selector
- pwem.protocols.protocol_create_stream_data
- pwem.protocols.protocol_ctf_assign
- pwem.protocols.protocol_export.protocol_export_DB
- pwem.protocols.protocol_extract_coordinates
- pwem.protocols.protocol_import.base
- pwem.protocols.protocol_import.coordinates
- pwem.protocols.protocol_import.ctfs
- pwem.protocols.protocol_import.dataimport
- pwem.protocols.protocol_import.images
- pwem.protocols.protocol_import.masks
- pwem.protocols.protocol_import.micrographs
- pwem.protocols.protocol_import.particles
- pwem.protocols.protocol_import.sequence
- pwem.protocols.protocol_import.volumes
- pwem.protocols.protocol_micrographs
- pwem.protocols.protocol_movie_eraser
- pwem.protocols.protocol_movies
- pwem.protocols.protocol_origin_sampling_volume
- pwem.protocols.protocol_particles
- pwem.protocols.protocol_particles_picking
- pwem.protocols.protocol_pdf_report
- pwem.protocols.protocol_set_editor
- pwem.protocols.protocol_set_filter
- pwem.protocols.protocol_sets
- pwem.protocols.protocol_tests
- pwem.protocols.protocol_tiltpairs
- pwem.utils
- pwem.viewers.filehandlers
- pwem.viewers.plotter
- pwem.viewers.showj
- pwem.viewers.viewer_base
- pwem.viewers.viewer_chimera
- pwem.viewers.viewer_fsc
- pwem.viewers.viewer_localres
- pwem.viewers.viewer_pdf
- pwem.viewers.viewer_sequence
- pwem.viewers.viewer_vmd
- pwem.viewers.viewer_volumes
- pwem.viewers.viewers_data
- pwem.viewers.views
- pwem.wizards.wizard
- pwem.wizards.wizards
- pwem.wizards.wizards_3d.callbacks
- pwem.wizards.wizards_3d.mask_structure_wizard
- pwem.wizards.wizards_3d.mask_volume_wizard
- pwperformance
- pyseg
- pyseg.convert
- pyseg.protocols.protocol_2d_classification
- pyseg.protocols.protocol_fils
- pyseg.protocols.protocol_graphs
- pyseg.protocols.protocol_picking
- pyseg.protocols.protocol_post_rec_particles
- pyseg.protocols.protocol_pre_seg
- pyseg.utils
- pyseg.viewers.vesicle_graphs_fils_viewer
- pyseg.viewers.vesicle_visualization_tree
- pyseg.viewers.viewers_data
- pyworkflow.apps.pw_plot
- pyworkflow.apps.pw_project
- pyworkflow.apps.pw_protocol_list
- pyworkflow.apps.pw_protocol_remote
- pyworkflow.apps.pw_run_tests
- pyworkflow.apps.pw_schedule_run
- pyworkflow.apps.pw_sync_data
- pyworkflow.apps.pw_viewer
- pyworkflow.config
- pyworkflow.constants
- pyworkflow.exceptions
- pyworkflow.gui.browser
- pyworkflow.gui.canvas
- pyworkflow.gui.dialog
- pyworkflow.gui.form
- pyworkflow.gui.graph
- pyworkflow.gui.graph_layout
- pyworkflow.gui.gui
- pyworkflow.gui.matplotlib_image
- pyworkflow.gui.plotter
- pyworkflow.gui.project.base
- pyworkflow.gui.project.labels
- pyworkflow.gui.project.project
- pyworkflow.gui.project.utils
- pyworkflow.gui.project.viewdata
- pyworkflow.gui.project.viewprojects
- pyworkflow.gui.project.viewprotocols
- pyworkflow.gui.text
- pyworkflow.gui.tooltip
- pyworkflow.gui.tree
- pyworkflow.gui.widgets
- pyworkflow.mapper.mapper
- pyworkflow.mapper.sqlite
- pyworkflow.mapper.sqlite_db
- pyworkflow.mapper.xmlmapper
- pyworkflow.object
- pyworkflow.plugin
- pyworkflow.project.config
- pyworkflow.project.manager
- pyworkflow.project.project
- pyworkflow.protocol.executor
- pyworkflow.protocol.hosts
- pyworkflow.protocol.launch
- pyworkflow.protocol.package
- pyworkflow.protocol.params
- pyworkflow.protocol.protocol
- pyworkflow.template
- pyworkflow.tests.test_utils
- pyworkflow.tests.tests
- pyworkflow.utils.dataset
- pyworkflow.utils.echo
- pyworkflow.utils.graph
- pyworkflow.utils.log
- pyworkflow.utils.mpi
- pyworkflow.utils.path
- pyworkflow.utils.process
- pyworkflow.utils.profiler
- pyworkflow.utils.progressbar
- pyworkflow.utils.properties
- pyworkflow.utils.reflection
- pyworkflow.utils.utils
- pyworkflow.utils.which
- pyworkflow.viewer
- pyworkflow.webservices.notifier
- pyworkflow.webservices.repository
- pyworkflow.wizard
- relion
- relion.convert
- relion.convert.convert30
- relion.convert.convert31
- relion.convert.convert_base
- relion.convert.convert_coordinates
- relion.convert.convert_deprecated
- relion.convert.convert_utils
- relion.convert.dataimport
- relion.objects
- relion.protocols.protocol_assign_optic_groups
- relion.protocols.protocol_autopick
- relion.protocols.protocol_autopick_log
- relion.protocols.protocol_autopick_ref
- relion.protocols.protocol_base
- relion.protocols.protocol_bayesian_polishing
- relion.protocols.protocol_center_averages
- relion.protocols.protocol_classify2d
- relion.protocols.protocol_classify3d
- relion.protocols.protocol_compress_estimate_gain
- relion.protocols.protocol_compress_movies
- relion.protocols.protocol_create_mask3d
- relion.protocols.protocol_crop_resize
- relion.protocols.protocol_ctf_refinement
- relion.protocols.protocol_expand_symmetry
- relion.protocols.protocol_export_coords
- relion.protocols.protocol_export_ctf
- relion.protocols.protocol_export_particles
- relion.protocols.protocol_extract_particles
- relion.protocols.protocol_gentle_clean
- relion.protocols.protocol_initialmodel
- relion.protocols.protocol_localres
- relion.protocols.protocol_motioncor
- relion.protocols.protocol_multibody
- relion.protocols.protocol_postprocess
- relion.protocols.protocol_preprocess
- relion.protocols.protocol_reconstruct
- relion.protocols.protocol_refine3d
- relion.protocols.protocol_remove_views
- relion.protocols.protocol_subtract
- relion.protocols.protocol_symmetrize_volume
- relion.viewers.viewer_base
- relion.viewers.viewer_ctfrefine
- relion.viewers.viewer_locres
- relion.viewers.viewer_motioncor
- relion.viewers.viewer_polishing
- relion.viewers.viewer_postprocess
- relion.wizards
- reliontomo
- reliontomo.convert
- reliontomo.protocols.protocol_base_tomo
- reliontomo.protocols.protocol_classify_3d_tomo
- reliontomo.protocols.protocol_ctf_3d_estimation
- reliontomo.protocols.protocol_reconstruct_subtomo
- reliontomo.protocols.protocol_refine_3d_tomo
- resmap
- scipion.guiplugin
- scipion.install.change_rpath
- scipion.install.clean
- scipion.install.find_deps
- scipion.install.funcs
- scipion.install.install_plugin
- scipion.install.plugin_funcs
- scipion.install.plugin_manager
- scipion.install.update_manager
- scipion.scripts.config
- scipion.scripts.fontbrowser
- scipion.scripts.kickoff
- scipion.scripts.tutorial
- scipion.utils
- sidesplitter
- sphire
- sphire.constants
- sphire.convert
- sphire.objects
- sphire.protocols.protocol_cryolo_import
- sphire.protocols.protocol_cryolo_picking
- sphire.protocols.protocol_cryolo_training
- sphire.protocols.protocol_janni_denoise
- spider
- spider.convert
- spider.objects
- spider.protocols.protocol_align_apsr
- spider.protocols.protocol_align_base
- spider.protocols.protocol_align_pairwise
- spider.protocols.protocol_base
- spider.protocols.protocol_ca_pca
- spider.protocols.protocol_classify_base
- spider.protocols.protocol_classify_diday
- spider.protocols.protocol_classify_kmeans
- spider.protocols.protocol_classify_ward
- spider.protocols.protocol_custommask
- spider.protocols.protocol_filters
- spider.protocols.protocol_projmatch
- spider.protocols.protocol_reconstruct
- spider.utils
- spider.viewers.viewer
- spider.viewers.viewer_capca
- spider.viewers.viewer_classify
- spider.viewers.viewer_refinement
- spider.wizards
- tomo
- tomo.constants
- tomo.convert
- tomo.objects
- tomo.protocols.protocol_alignment_assign
- tomo.protocols.protocol_assignTransformationTS
- tomo.protocols.protocol_assign_tomo2subtomo
- tomo.protocols.protocol_base
- tomo.protocols.protocol_consensus_classes_subtomo
- tomo.protocols.protocol_ctf_validate
- tomo.protocols.protocol_extract_coordinates
- tomo.protocols.protocol_import_coordinates
- tomo.protocols.protocol_import_subtomograms
- tomo.protocols.protocol_import_tomograms
- tomo.protocols.protocol_split_evenodd_subtomos
- tomo.protocols.protocol_ts_base
- tomo.protocols.protocol_ts_correct_motion
- tomo.protocols.protocol_ts_estimate_ctf
- tomo.protocols.protocol_ts_import
- tomo.utils
- tomo.viewers.viewer_tomograms
- tomo.viewers.viewers_data
- tomo.viewers.views
- tomo.viewers.views_tkinter_tree
- tomo.wizards
- tomo3D
- tomo3D.protocols.protocol_mesh_normal
- tomo3D.protocols.protocol_particle_pick_consensus
- tomo3D.protocols.protocol_particle_pick_remove_duplicates
- tomo3D.utils
- tomo3D.viewers.viewer_mrc
- tomo3D.viewers.viewer_triangulations
- tomo3D.viewers.viewer_vtk
- tomo3D.viewers.viewers_data
- tomo3D.viewers.views_tkinter_tree
- tomoj
- topaz
- topaz.constants
- topaz.convert
- topaz.objects
- topaz.protocols.protocol_base
- topaz.protocols.protocol_topaz_import
- topaz.protocols.protocol_topaz_picking
- topaz.protocols.protocol_topaz_training
- xmipp2
- xmipp2.convert.convert
- xmipp2.protocols.protocol_mltomo
- xmipp2.viewers.viewer
- xmipp2.viewers.viewer_MlTomo
- xmipp3
- xmipp3.base
- xmipp3.convert.convert
- xmipp3.convert.dataimport
- xmipp3.convert.io_coordinates
- xmipp3.programs
- xmipp3.protocols.protocol_align_volume
- xmipp3.protocols.protocol_align_volume_and_particles
- xmipp3.protocols.protocol_analyze_local_ctf
- xmipp3.protocols.protocol_apply_alignment
- xmipp3.protocols.protocol_apply_transformation_matrix
- xmipp3.protocols.protocol_assignment_tilt_pair
- xmipp3.protocols.protocol_break_symmetry
- xmipp3.protocols.protocol_center_particles
- xmipp3.protocols.protocol_cl2d
- xmipp3.protocols.protocol_cl2d_align
- xmipp3.protocols.protocol_classification_gpuCorr
- xmipp3.protocols.protocol_classification_gpuCorr_full
- xmipp3.protocols.protocol_classification_gpuCorr_semi
- xmipp3.protocols.protocol_classify_kmeans2d
- xmipp3.protocols.protocol_compare_angles
- xmipp3.protocols.protocol_compare_reprojections
- xmipp3.protocols.protocol_consensus_classes3D
- xmipp3.protocols.protocol_consensus_local_ctf
- xmipp3.protocols.protocol_convert_pdb
- xmipp3.protocols.protocol_create_gallery
- xmipp3.protocols.protocol_ctf_consensus
- xmipp3.protocols.protocol_ctf_correct_wiener2d
- xmipp3.protocols.protocol_ctf_defocus_group
- xmipp3.protocols.protocol_ctf_micrographs
- xmipp3.protocols.protocol_deep_align
- xmipp3.protocols.protocol_deep_denoising
- xmipp3.protocols.protocol_deep_micrograph_screen
- xmipp3.protocols.protocol_denoise_particles
- xmipp3.protocols.protocol_eliminate_empty_images
- xmipp3.protocols.protocol_enrich
- xmipp3.protocols.protocol_extract_asymmetric_unit
- xmipp3.protocols.protocol_extract_particles
- xmipp3.protocols.protocol_extract_particles_movies
- xmipp3.protocols.protocol_extract_particles_pairs
- xmipp3.protocols.protocol_generate_reprojections
- xmipp3.protocols.protocol_helical_parameters
- xmipp3.protocols.protocol_kerdensom
- xmipp3.protocols.protocol_local_ctf
- xmipp3.protocols.protocol_metaprotocol_create_output
- xmipp3.protocols.protocol_metaprotocol_create_subset
- xmipp3.protocols.protocol_metaprotocol_discrete_heterogeneity_scheduler
- xmipp3.protocols.protocol_metaprotocol_golden_highres
- xmipp3.protocols.protocol_ml2d
- xmipp3.protocols.protocol_mltomo
- xmipp3.protocols.protocol_movie_average
- xmipp3.protocols.protocol_movie_correlation
- xmipp3.protocols.protocol_movie_gain
- xmipp3.protocols.protocol_movie_max_shift
- xmipp3.protocols.protocol_movie_opticalflow
- xmipp3.protocols.protocol_movie_split_frames
- xmipp3.protocols.protocol_multiple_fscs
- xmipp3.protocols.protocol_multireference_alignability
- xmipp3.protocols.protocol_normalize_strain
- xmipp3.protocols.protocol_particle_boxsize
- xmipp3.protocols.protocol_particle_pick
- xmipp3.protocols.protocol_particle_pick_automatic
- xmipp3.protocols.protocol_particle_pick_consensus
- xmipp3.protocols.protocol_particle_pick_pairs
- xmipp3.protocols.protocol_particle_pick_remove_duplicates
- xmipp3.protocols.protocol_pick_noise
- xmipp3.protocols.protocol_postProcessing_deepPostProcessing
- xmipp3.protocols.protocol_preprocess.geometrical_mask
- xmipp3.protocols.protocol_preprocess.protocol_add_noise
- xmipp3.protocols.protocol_preprocess.protocol_create_mask2d
- xmipp3.protocols.protocol_preprocess.protocol_create_mask3d
- xmipp3.protocols.protocol_preprocess.protocol_crop_resize
- xmipp3.protocols.protocol_preprocess.protocol_filter
- xmipp3.protocols.protocol_preprocess.protocol_image_operate
- xmipp3.protocols.protocol_preprocess.protocol_mask
- xmipp3.protocols.protocol_preprocess.protocol_movie_resize
- xmipp3.protocols.protocol_preprocess.protocol_preprocess
- xmipp3.protocols.protocol_preprocess.protocol_process
- xmipp3.protocols.protocol_preprocess_micrographs
- xmipp3.protocols.protocol_projmatch.projmatch_initialize
- xmipp3.protocols.protocol_projmatch.projmatch_steps
- xmipp3.protocols.protocol_projmatch.protocol_projmatch
- xmipp3.protocols.protocol_random_conical_tilt
- xmipp3.protocols.protocol_ransac
- xmipp3.protocols.protocol_reconstruct_fourier
- xmipp3.protocols.protocol_reconstruct_heterogeneous
- xmipp3.protocols.protocol_reconstruct_highres
- xmipp3.protocols.protocol_reconstruct_significant
- xmipp3.protocols.protocol_reconstruct_swarm
- xmipp3.protocols.protocol_resolution3d
- xmipp3.protocols.protocol_resolution_bfactor
- xmipp3.protocols.protocol_resolution_deepres
- xmipp3.protocols.protocol_resolution_directional
- xmipp3.protocols.protocol_resolution_fso
- xmipp3.protocols.protocol_resolution_monogenic_signal
- xmipp3.protocols.protocol_rotational_spectra
- xmipp3.protocols.protocol_rotational_symmetry
- xmipp3.protocols.protocol_screen_deepConsensus
- xmipp3.protocols.protocol_screen_deeplearning
- xmipp3.protocols.protocol_screen_particles
- xmipp3.protocols.protocol_shift_particles
- xmipp3.protocols.protocol_simulate_ctf
- xmipp3.protocols.protocol_solid_angles
- xmipp3.protocols.protocol_split_volume
- xmipp3.protocols.protocol_split_volume_hierarchical_cluster
- xmipp3.protocols.protocol_trigger_data
- xmipp3.protocols.protocol_validate_fscq
- xmipp3.protocols.protocol_validate_nontilt
- xmipp3.protocols.protocol_validate_overfitting
- xmipp3.protocols.protocol_volume_adjust_sub
- xmipp3.protocols.protocol_volume_consensus
- xmipp3.protocols.protocol_volume_local_sharpening
- xmipp3.protocols.protocol_volume_strain
- xmipp3.protocols.protocol_write_testC
- xmipp3.protocols.protocol_write_testP
- xmipp3.utils
- xmipp3.viewers.plotter
- xmipp3.viewers.viewer
- xmipp3.viewers.viewer_analyze_local_ctf
- xmipp3.viewers.viewer_cl2d
- xmipp3.viewers.viewer_ctf_consensus
- xmipp3.viewers.viewer_deepEMHancer
- xmipp3.viewers.viewer_deep_align
- xmipp3.viewers.viewer_deep_consensus
- xmipp3.viewers.viewer_deep_micrograph_cleaner
- xmipp3.viewers.viewer_eliminate_empty_images
- xmipp3.viewers.viewer_extract_asymmetric_unit
- xmipp3.viewers.viewer_local_sharpening
- xmipp3.viewers.viewer_metaprotocol_golden_highres
- xmipp3.viewers.viewer_ml2d
- xmipp3.viewers.viewer_mltomo
- xmipp3.viewers.viewer_movie_alignment
- xmipp3.viewers.viewer_normalize_strain
- xmipp3.viewers.viewer_projmatch
- xmipp3.viewers.viewer_ransac
- xmipp3.viewers.viewer_reconstruct_highres
- xmipp3.viewers.viewer_resolution3d
- xmipp3.viewers.viewer_resolution_bfactor
- xmipp3.viewers.viewer_resolution_deepres
- xmipp3.viewers.viewer_resolution_directional
- xmipp3.viewers.viewer_resolution_fso
- xmipp3.viewers.viewer_resolution_monogenic_signal
- xmipp3.viewers.viewer_solid_angles
- xmipp3.viewers.viewer_split_volume
- xmipp3.viewers.viewer_swarm
- xmipp3.viewers.viewer_validate_fscq
- xmipp3.viewers.viewer_validate_nontilt
- xmipp3.viewers.viewer_validate_overfitting
- xmipp3.viewers.viewer_volume_consensus
- xmipp3.viewers.viewer_volume_strain
- xmipp3.viewers.viewer_volume_subtraction
- xmipp3.wizards
- xmipptomo
- xmipptomo.protocols.protocol_align_transform
- xmipptomo.protocols.protocol_applyAlignmentTS
- xmipptomo.protocols.protocol_apply_alignment_subtomo
- xmipptomo.protocols.protocol_cltomo
- xmipptomo.protocols.protocol_connected_components
- xmipptomo.protocols.protocol_coords_roi
- xmipptomo.protocols.protocol_fit_ellipsoid
- xmipptomo.protocols.protocol_flexalign
- xmipptomo.protocols.protocol_misalignTS
- xmipptomo.protocols.protocol_phantom_subtomo
- xmipptomo.protocols.protocol_project_top
- xmipptomo.protocols.protocol_resizeTS
- xmipptomo.protocols.protocol_resize_base
- xmipptomo.protocols.protocol_resize_tomograms
- xmipptomo.protocols.protocol_resolution_local_monotomo
- xmipptomo.protocols.protocol_roiIJ
- xmipptomo.protocols.protocol_rotate_astigmatism
- xmipptomo.protocols.protocol_score_coordinates
- xmipptomo.protocols.protocol_score_transform
- xmipptomo.protocols.protocol_splitTS
- xmipptomo.protocols.protocol_subtomo_map_back
- xmipptomo.protocols.protocol_subtraction_subtomo
- xmipptomo.utils
- xmipptomo.viewers.monotomo_tree_provider
- xmipptomo.viewers.viewer_cltomo
- xmipptomo.viewers.viewer_resolution_local_monotomo
- xmipptomo.wizards